Sample Name: Javanese

Sample UID: SA001215J

Sample Description:This sample consists of unrelated individuals belonging to the Javanese population residing in Malaysia. Proximity and better employment opportunities are factors contributing to strong migration flow of Javanese in Malaysia. DNA was extracted from saliva samples.

Number of Chromosomes: 218

Relation to Other Samples:

References:
- Othman MI, Seah LH, Panneerchelvam S, Nor NM. "Allele frequencies for the PowerPlex 16 STR loci in Javanese population in Malaysia". J Forensic Sci. 49:190-191. (2004) Online citation.

Sample Name: Javanese

Sample UID: SA000703K

Sample Description:This sample consists of randomly selected individuals of both sexes, aged 1 to 80. There were almost equal numbers of males and females. The individuals was selected from a rural area in Java.

Number of Chromosomes: 462

Relation to Other Samples:

References:
- Gajra B, Candish JK, Saha N, Heng CK, Soemantri AG, Tay JSH "Influence of polymorphisms for Apolipoprotein B (ins/del, XbaI, EcoRI) and Apolipoprotein E on serum lipids and Apolipoproteins in a Javanese population". Genet Epidemiol 11:19-27. (1994)

Sample Name: Javanese

Sample UID: SA000285P

Sample Description:Austronesian-speaking group from a Western MalayoPolynesian group

Number of Chromosomes: 60

Relation to Other Samples:

References:
- Parra E, Saha N, Soemantri AG, McGarvey ST, Hundrieser J, Shriver MD, Deka R. "Genetic Variation at 9 autosomal Microsatellite Loci in Asian and Pacific Populations". Hum. Biol. 71:757-779. (1999) Online citation.

Sample Name: Javanese (ID-JA)

Sample UID: SA003406N

Sample Description:This sample consists of Javanese individuals from Jakarta, Indonesia.

Note: This sample is part of the HUGO Pan-Asian SNP Consortium. The 71 samples from this Consortium were collected with informed consent and were approved by local ethics and institutional review boards (IRBs) in the respective countries from which the samples were collected. Copies of IRB approvals were reviewed with the Policy Review Board (PRB) of the Pan Asia SNP Consortium.

Number of Chromosomes: 68

Relation to Other Samples:

References:
- HUGO Pan-Asian SNP Consortium, Abdulla MA etal. "Mapping human genetic diversity in Asia". Science. 329:1541-5. (2009) Online citation.

Sample Name: Java

Sample UID: SA000533L

Sample Description:This sample was collected from the rural areas of central Java, near Semarang.

Number of Chromosomes: 64

Relation to Other Samples:

References:
- Melton T, Peterson R, Redd AJ, Saha N, Sofro ASM, Martinson J, Stoneking M. "Polynesian genetic affinities with southeast Asian populations as identified by mtDNA analysis". Am J Hum Genet 57:403-414. (1995) Online citation.

Sample Name: Jogiakarta

Sample UID: SA001210E

Sample Description:This sample consists of individuals from Jogiakarta on the island of Java in Indonesia.

Number of Chromosomes: 100

Relation to Other Samples:

References:
- Chen LZ, Easteal S, Board PG, Kirk RL. "Evolution of beta-globin haplotypes in human populations". Mol Biol Evol. 7:423-437. (1990) Online citation.

Sample Name: Javanese

Sample UID: SA003043K

Sample Description:This sample consists of Indonesian Javanese (28 males and 40 females) living in Java Island. Informed consent were obtained.

Number of Chromosomes: 136

Relation to Other Samples:

References:
- Sadewa AH, Sunarti, Sutomo R, Hayashi C, Lee MJ, Ayaki H, Sofro AS, Matsuo M, Nishio H "The C677T mutation in the methylenetetrahydrofolate reductase gene among the Indonesian Javanese population". Kobe J Med Sci. 48:137-44. (2002) Online citation.

Sample Name: Javanese

Sample UID: SA002340J

Sample Description:This sample consists of Javanese individuals.

Number of Chromosomes: 48

Relation to Other Samples:

References:
- Su B, Sun G, Lu D, Xiao J, Hu F, Chakraborty R, Deka R, Jin L "Distribution of three HIV-1 resistance-conferring polymorphisms (SDF1-3'A, CCR2-641, and CCR5-delta32) in global populations". Eur J Hum Genet. 8:975-9. (2000) Online citation.

Sample Name: Java

Sample UID: SA001756T

Sample Description:This sample consists of individuals from the general population of Java, an island of the Inodnesian chain. Individuals were identified by biogeographical information traced back at least two generations. This sample was collected by Dr. Rene J. Herrera.

Number of Chromosomes: 120

Relation to Other Samples:

References:
- Shepard EM, Chow RA, Suafo'a E, Addison D, Perez-Miranda AM, Garcia-Bertrand RL, Herrera RJ. "Autosomal STR variation in five Austronesian populations". Hum Biol 77:825-851. (2005) Online citation.

Sample Name: Javanese (ID-JV)

Sample UID: SA003407O

Sample Description:This sample consists of Javanese individuals from Java, Indonesia.

Note: This sample is part of the HUGO Pan-Asian SNP Consortium. The 71 samples from this Consortium were collected with informed consent and were approved by local ethics and institutional review boards (IRBs) in the respective countries from which the samples were collected. Copies of IRB approvals were reviewed with the Policy Review Board (PRB) of the Pan Asia SNP Consortium.

Number of Chromosomes: 38

Relation to Other Samples:

References:
- HUGO Pan-Asian SNP Consortium, Abdulla MA etal. "Mapping human genetic diversity in Asia". Science. 329:1541-5. (2009) Online citation.

Sample Name: Javanese

Sample UID: SA002601J

Sample Description:This sample consists of unrelated Javanese from Insular Southeast Asia.

Number of Chromosomes: 296

Relation to Other Samples:

References:
- Kimura R, Soemantri A, Settheetham-Ishida W, Ohtsuka R, Inaoka T, Pookajorn S, Tiwawech D, Duanchang P, Ishida T "Anthropological implication of the SDF1-3'A allele distribution in Southeast Asia and Melanesia.". J Hum Genet. 47:117-121. (2002) Online citation.

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© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan