Sample Name: Philippines: Negrito
Sample UID: SA002561O
Sample Description:This sample consists of unrelated Negritos from the Philippines.
Number of Chromosomes: 60
Relation to Other Samples:
References:- Martinson JJ, Chapman NH, Rees DC, Liu YT, Clegg JB. "Global distribution of the CCR5 gene 32-basepair deletion". Nat Genet 16:100-103. (1997) Online citation.
Sample Name: Philippino
Sample UID: SA001078Q
Sample Description:This sample consists of Philippinos living in Taiwan. Samples from the individuals were collected when they visited hospital for their periodical physical inspection.
Number of Chromosomes: 576
References:- Pu CE, Hsieh CM, Chen MY, Wu FC, Sun CF. "Genetic variation at nine STR loci in populations from the Philippines and Thailand living in Taiwan". Forensic Sci Int. 106:1-6. (1999) Online citation.
Sample Name: Filipino
Sample UID: SA001787X
Sample Description:This sample consiist of unrelated individuals from the National Capital Region (n=30), and the three major island groups: Luzon (n=37), Visayas (n=7), and Mindanao (n=34). (Philippins)
Number of Chromosomes: 212
References:- De Ungria MC, Roby RK, Tabbada KA, Rao-Coticone S, Tan MM, Hernandez KN. "Allele frequencies of 19 STR loci in a Philippine population generated using AmpFlSTR multiplex and ALF singleplex systems". Forensic Sci Int. 152:281-284. (2005) Online citation.
Sample Name: Filipino (PI-UI)
Sample UID: SA003420J
Sample Description:This sample consists of Filipinos from Zamboango, Phillipines.
Note: This sample is part of the HUGO Pan-Asian SNP Consortium. The 71 samples from this Consortium were collected with informed consent and were approved by local ethics and institutional review boards (IRBs) in the respective countries from which the samples were collected. Copies of IRB approvals were reviewed with the Policy Review Board (PRB) of the Pan Asia SNP Consortium.
Number of Chromosomes: 40
References:- HUGO Pan-Asian SNP Consortium, Abdulla MA etal. "Mapping human genetic diversity in Asia". Science. 329:1541-5. (2009) Online citation.
Sample UID: SA000899A
Sample Description:This sample consists of unrelated individuals from Metro Manila (Philippines).
Number of Chromosomes: 206
References:- Halos SC, Fortuno ES 3rd, Ferreon AC, Chu JY, Miranda J, Harada S, Benecke M.
"Allele frequency distributions of the polymorphic STR loci HUMVWA, HUMFES, HUMF13A01 and the VNTR D1S80 in a Filipino population from Metro Manila". Int J Legal Med 111:224-226. (1998) Online citation.
Sample Name: Filipino (CLHNS study)
Sample UID: SA003638U
Sample Description:This sample consists of cohort of Filipino women from the ongoing Cebu Longitudinal Health and Nutrition Survey (CLHNS) based in the Philippines. 1,895 female participants from the ongoing CLHNS were evaluated. Trained field staff conducted in-home interviews and collected anthropometrics, blood samples, and comprehensive environmental data (publicly available at www.cpc.unc.edu/projects/cebu/). Informed consent was obtained from all CLHNS subjects, and the University of North Carolina Institutional Review Board for the Protection of Human Subjects approved the study protocol.
Number of Chromosomes: 3790
References:- Croteau-Chonka DC, Marvelle AF, Lange EM, Lee NR, Adair LS, Lange LA, Mohlke KL. "Genome-Wide Association Study of Anthropometric Traits and Evidence of Interactions With Age and Study Year in Filipino Women". Obesity (Silver Spring) (2010) Online citation.
Sample UID: SA000287R
Sample Description:Austronesian-speaking group from a Western MalayoPolynesian group.
References:- Parra E, Saha N, Soemantri AG, McGarvey ST, Hundrieser J, Shriver MD, Deka R. "Genetic Variation at 9 autosomal Microsatellite Loci in Asian and Pacific Populations". Hum. Biol. 71:757-779. (1999) Online citation.
Sample UID: SA000531J
Sample Description:This sample consists of the following groups, immigrants (female) to Singapore, individuals from the northern island of Ilocano (provided by Roche Laboratories), and individuals from Filipino U.S. military personnel.
Number of Chromosomes: 94
References:- Melton T, Peterson R, Redd AJ, Saha N, Sofro ASM, Martinson J, Stoneking M. "Polynesian genetic affinities with southeast Asian populations as identified by mtDNA analysis". Am J Hum Genet 57:403-414. (1995) Online citation.
Sample UID: SA001384Q
Sample Description:This sample consists of Filipino individuals who gave informed consent.
Number of Chromosomes: 234
References:- Chang JG, Ko YC, Lee JC, Chang SJ, Liu TC, Shih MC, Peng CT. "Molecular analysis of mutations and polymorphisms of the Lewis secretor type alpha(1,2)-fucosyltransferase gene reveals that Taiwan aborigines are of Austronesian derivation". J Hum Genet. 47:60-65. (2002) Online citation.
Sample Name: Fillipino
Sample UID: SA002214J
Sample Description:This sample consists of Fillipino individuals.
Number of Chromosomes: 66
References:- Lu Y, Nerurkar VR, Dashwood WM, Woodward CL, Ablan S, Shikuma CM, Grandinetti A, Chang H, Nguyen HT, Wu Z, Yamamura Y, Boto WO, Merriwether A, Kurata T, Detels R, Yanagihara R "Genotype and allele frequency of a 32-base pair deletion mutation in the CCR5 gene in various ethnic groups: absence of mutation among Asians and Pacific Islanders". Int J Infect Dis. 3:186-91. (1999) Online citation.
Sample UID: SA002107K
Sample Description:This sample consists of unrelated male and female Filipinos from the Philippines.
Number of Chromosomes: 114
References:- Goedde HW, Agarwal DP, Fritze G, Meier-Tackmann D, Singh S, Beckmann G, Bhatia K, Chen LZ, Fang B, Lisker R "Distribution of ADH2 and ALDH2 genotypes in different populations". Hum Genet. 88:344-6. (1992) Online citation.
Sample Name: Filipino (PI-UN)
Sample UID: SA003421K
Sample Description:This sample consists of Filipinos from Metro Manila, Phillipines.
Number of Chromosomes: 38
Sample Name: Filipino (PI-UB)
Sample UID: SA003419R
Sample Description:This sample consists of Filipinos from Isabela Province, Phillipines.
Sample Name: Palawan
Sample UID: SA001627Q
Sample Description:This sample consists of individuals from Palawan, an island province of the Philippines.
Number of Chromosomes: 96
References:- Yoshiura KI et al. "A SNP in the ABCC11 gene is the determinant of human earwax type.". Nat Genet. 38:324-330. (2006) Online citation.
Sample Name: Filipino American
Sample UID: SA003474S
Sample Description:This sample consists of Filipino Americans from New York city and were collected as part of the New York Cancer Project. The subjects studied were all healthy and not first-degree relatives of each other based on self-reporting.
Number of Chromosomes: 90
References:- Kosoy R, Nassir R, Tian C, White PA, Butler LM, Silva G, Kittles R, Alarcon-Riquelme ME, Gregersen PK, Belmont JW, De La Vega FM, Seldin MF. "Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America". Hum Mutat 30:69-78. (2009) Online citation.
Sample UID: SA002527Q
Sample Description:This sample consists of unrelated Filipino individuals from Philippines. This sample was collected as part of anthropological surveys of investigation of non-HIV related medical conditions.
Number of Chromosomes: 52
© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.Originally prototyped by Michael Osier with the aid of Kei CheungUpgrades and maintenance since 2002 by Haseena Rajeevan