Sample Name: Philippines: Negrito

Sample UID: SA002561O

Sample Description:This sample consists of unrelated Negritos from the Philippines.

Number of Chromosomes: 60

Relation to Other Samples:

References:
- Martinson JJ, Chapman NH, Rees DC, Liu YT, Clegg JB. "Global distribution of the CCR5 gene 32-basepair deletion". Nat Genet 16:100-103. (1997) Online citation.

Sample Name: Philippino

Sample UID: SA001078Q

Sample Description:This sample consists of Philippinos living in Taiwan. Samples from the individuals were collected when they visited hospital for their periodical physical inspection.

Number of Chromosomes: 576

Relation to Other Samples:

References:
- Pu CE, Hsieh CM, Chen MY, Wu FC, Sun CF. "Genetic variation at nine STR loci in populations from the Philippines and Thailand living in Taiwan". Forensic Sci Int. 106:1-6. (1999) Online citation.

Sample Name: Filipino

Sample UID: SA001787X

Sample Description:This sample consiist of unrelated individuals from the National Capital Region (n=30), and the three major island groups: Luzon (n=37), Visayas (n=7), and Mindanao (n=34). (Philippins)

Number of Chromosomes: 212

Relation to Other Samples:

References:
- De Ungria MC, Roby RK, Tabbada KA, Rao-Coticone S, Tan MM, Hernandez KN. "Allele frequencies of 19 STR loci in a Philippine population generated using AmpFlSTR multiplex and ALF singleplex systems". Forensic Sci Int. 152:281-284. (2005) Online citation.

Sample Name: Filipino (PI-UI)

Sample UID: SA003420J

Sample Description:This sample consists of Filipinos from Zamboango, Phillipines.

Note: This sample is part of the HUGO Pan-Asian SNP Consortium. The 71 samples from this Consortium were collected with informed consent and were approved by local ethics and institutional review boards (IRBs) in the respective countries from which the samples were collected. Copies of IRB approvals were reviewed with the Policy Review Board (PRB) of the Pan Asia SNP Consortium.

Number of Chromosomes: 40

Relation to Other Samples:

References:
- HUGO Pan-Asian SNP Consortium, Abdulla MA etal. "Mapping human genetic diversity in Asia". Science. 329:1541-5. (2009) Online citation.

Sample Name: Filipino

Sample UID: SA000899A

Sample Description:This sample consists of unrelated individuals from Metro Manila (Philippines).

Number of Chromosomes: 206

Relation to Other Samples:

References:
- Halos SC, Fortuno ES 3rd, Ferreon AC, Chu JY, Miranda J, Harada S, Benecke M. "Allele frequency distributions of the polymorphic STR loci HUMVWA, HUMFES, HUMF13A01 and the VNTR D1S80 in a Filipino population from Metro Manila". Int J Legal Med 111:224-226. (1998) Online citation.

Sample Name: Filipino (CLHNS study)

Sample UID: SA003638U

Sample Description:This sample consists of cohort of Filipino women from the ongoing Cebu Longitudinal Health and Nutrition Survey (CLHNS) based in the Philippines. 1,895 female participants from the ongoing CLHNS were evaluated. Trained field staff conducted in-home interviews and collected anthropometrics, blood samples, and comprehensive environmental data (publicly available at www.cpc.unc.edu/projects/cebu/). Informed consent was obtained from all CLHNS subjects, and the University of North Carolina Institutional Review Board for the Protection of Human Subjects approved the study protocol.

Number of Chromosomes: 3790

Relation to Other Samples:

References:
- Croteau-Chonka DC, Marvelle AF, Lange EM, Lee NR, Adair LS, Lange LA, Mohlke KL. "Genome-Wide Association Study of Anthropometric Traits and Evidence of Interactions With Age and Study Year in Filipino Women". Obesity (Silver Spring) (2010) Online citation.

Sample Name: Filipino

Sample UID: SA000287R

Sample Description:Austronesian-speaking group from a Western MalayoPolynesian group.

Number of Chromosomes: 60

Relation to Other Samples:

References:
- Parra E, Saha N, Soemantri AG, McGarvey ST, Hundrieser J, Shriver MD, Deka R. "Genetic Variation at 9 autosomal Microsatellite Loci in Asian and Pacific Populations". Hum. Biol. 71:757-779. (1999) Online citation.

Sample Name: Filipino

Sample UID: SA000531J

Sample Description:This sample consists of the following groups, immigrants (female) to Singapore, individuals from the northern island of Ilocano (provided by Roche Laboratories), and individuals from Filipino U.S. military personnel.

Number of Chromosomes: 94

Relation to Other Samples:

References:
- Melton T, Peterson R, Redd AJ, Saha N, Sofro ASM, Martinson J, Stoneking M. "Polynesian genetic affinities with southeast Asian populations as identified by mtDNA analysis". Am J Hum Genet 57:403-414. (1995) Online citation.

Sample Name: Filipino

Sample UID: SA001384Q

Sample Description:This sample consists of Filipino individuals who gave informed consent.

Number of Chromosomes: 234

Relation to Other Samples:

References:
- Chang JG, Ko YC, Lee JC, Chang SJ, Liu TC, Shih MC, Peng CT. "Molecular analysis of mutations and polymorphisms of the Lewis secretor type alpha(1,2)-fucosyltransferase gene reveals that Taiwan aborigines are of Austronesian derivation". J Hum Genet. 47:60-65. (2002) Online citation.

Sample Name: Fillipino

Sample UID: SA002214J

Sample Description:This sample consists of Fillipino individuals.

Number of Chromosomes: 66

Relation to Other Samples:

References:
- Lu Y, Nerurkar VR, Dashwood WM, Woodward CL, Ablan S, Shikuma CM, Grandinetti A, Chang H, Nguyen HT, Wu Z, Yamamura Y, Boto WO, Merriwether A, Kurata T, Detels R, Yanagihara R "Genotype and allele frequency of a 32-base pair deletion mutation in the CCR5 gene in various ethnic groups: absence of mutation among Asians and Pacific Islanders". Int J Infect Dis. 3:186-91. (1999) Online citation.

Sample Name: Filipino

Sample UID: SA002107K

Sample Description:This sample consists of unrelated male and female Filipinos from the Philippines.

Number of Chromosomes: 114

Relation to Other Samples:

References:
- Goedde HW, Agarwal DP, Fritze G, Meier-Tackmann D, Singh S, Beckmann G, Bhatia K, Chen LZ, Fang B, Lisker R "Distribution of ADH2 and ALDH2 genotypes in different populations". Hum Genet. 88:344-6. (1992) Online citation.

Sample Name: Filipino (PI-UN)

Sample UID: SA003421K

Sample Description:This sample consists of Filipinos from Metro Manila, Phillipines.

Note: This sample is part of the HUGO Pan-Asian SNP Consortium. The 71 samples from this Consortium were collected with informed consent and were approved by local ethics and institutional review boards (IRBs) in the respective countries from which the samples were collected. Copies of IRB approvals were reviewed with the Policy Review Board (PRB) of the Pan Asia SNP Consortium.

Number of Chromosomes: 38

Relation to Other Samples:

References:
- HUGO Pan-Asian SNP Consortium, Abdulla MA etal. "Mapping human genetic diversity in Asia". Science. 329:1541-5. (2009) Online citation.

Sample Name: Filipino (PI-UB)

Sample UID: SA003419R

Sample Description:This sample consists of Filipinos from Isabela Province, Phillipines.

Note: This sample is part of the HUGO Pan-Asian SNP Consortium. The 71 samples from this Consortium were collected with informed consent and were approved by local ethics and institutional review boards (IRBs) in the respective countries from which the samples were collected. Copies of IRB approvals were reviewed with the Policy Review Board (PRB) of the Pan Asia SNP Consortium.

Number of Chromosomes: 40

Relation to Other Samples:

References:
- HUGO Pan-Asian SNP Consortium, Abdulla MA etal. "Mapping human genetic diversity in Asia". Science. 329:1541-5. (2009) Online citation.

Sample Name: Palawan

Sample UID: SA001627Q

Sample Description:This sample consists of individuals from Palawan, an island province of the Philippines.

Number of Chromosomes: 96

Relation to Other Samples:

References:
- Yoshiura KI et al. "A SNP in the ABCC11 gene is the determinant of human earwax type.". Nat Genet. 38:324-330. (2006) Online citation.

Sample Name: Filipino American

Sample UID: SA003474S

Sample Description:This sample consists of Filipino Americans from New York city and were collected as part of the New York Cancer Project. The subjects studied were all healthy and not first-degree relatives of each other based on self-reporting.

Number of Chromosomes: 90

Relation to Other Samples:

References:
- Kosoy R, Nassir R, Tian C, White PA, Butler LM, Silva G, Kittles R, Alarcon-Riquelme ME, Gregersen PK, Belmont JW, De La Vega FM, Seldin MF. "Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America". Hum Mutat 30:69-78. (2009) Online citation.

Sample Name: Filipino

Sample UID: SA002527Q

Sample Description:This sample consists of unrelated Filipino individuals from Philippines. This sample was collected as part of anthropological surveys of investigation of non-HIV related medical conditions.

Number of Chromosomes: 52

Relation to Other Samples:

References:
- Martinson JJ, Chapman NH, Rees DC, Liu YT, Clegg JB. "Global distribution of the CCR5 gene 32-basepair deletion". Nat Genet 16:100-103. (1997) Online citation.

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© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan