ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the U. S. National Science Foundation.
ALFRED detailed record information

Polymorphism Information

NameALFRED UIDLocus NameLocus Symbol
2-site haplotype ((CA) repeat 2, Alu)SI000221FPlasminogen activator, tissuePLAT
Synonyms:
Frequency on Map:    
Frequency Display Formats:     
Estimated Heterozygosity: 
Frequency Download:   
External Resources: GenBank sequence Record  
References: See References
Polymorphism Description:  The 2-site haplotype (ordered from left to right) is comprised of (CA)n repeat_#2 (located in intron 1) and Alu insertion (UID=SI000152I) sites, which are 11.553 kb apart.
Alleles:
Allele NameAllele SymbolDescription
105+105+(CA)105, Alu element present
105-105-(CA)105, Alu element absent
107+107+(CA)107, Alu element present
107-107-(CA)107, Alu element absent
109+109+(CA)109, Alu element present
109-109-(CA)109, Alu element absent
111+111+(CA)111, Alu element present
111-111-(CA)111, Alu element absent
113+113+(CA)113, Alu element present
113-113-(CA)113, Alu element absent
115+115+(CA)115, Alu element present
115-115-(CA)115, Alu element absent
117+117+(CA)117, Alu element present
117-117-(CA)117, Alu element absent
119+119+(CA)119, Alu element present
119-119-(CA)119, Alu element absent
121+121+(CA)121, Alu element present
121-121-(CA)121, Alu element absent
123+123+(CA)123, Alu element present
123-123-(CA)123, Alu element absent
125+125+(CA)125, Alu element present
125-125-(CA)125, Alu element absent
127+127+(CA)127, Alu element present
127-127-(CA)127, Alu element absent
129+129+(CA)129, Alu element present
129-129-(CA)129, Alu element absent
131+131+(CA)131, Alu element present
131-131-(CA)131, Alu element absent
133+133+(CA)133, Alu element present
133-133-(CA)133, Alu element absent
135+135+(CA)135, Alu element present
135-135-(CA)135, Alu element absent
136+136+(CA)136, Alu element present
136-136-(CA)136, Alu element absent
138+138+(CA)138, Alu element present
138-138-(CA)138, Alu element absent
140+140+(CA)140, Alu element present
140-140-(CA)140, Alu element absent
142+142+(CA)142, Alu element present
142-142-(CA)142, Alu element absent
144+144+(CA)144, Alu element present
144-144-(CA)144, Alu element absent
146+146+(CA)146, Alu element present
146-146-(CA)146, Alu element absent
148+148+(CA)148, Alu element present
148-148-(CA)148, Alu element absent
150-150-(CA)150, Alu element absent
152-152-(CA)152, Alu element absent
154-154-(CA)154, Alu element absent
156+156+(CA)156, Alu element present
156-156-(CA)156, Alu element absent
158+158+(CA)158, Alu element present
164-164-(CA)164, Alu element absent
166+166+(CA)166, Alu element present
166-166-(CA)166, Alu element absent

References:
- Sadler LA, Blanton SH, Daiger SP. "Dinucleotide repeat polymorphism at the human tissue plasminogen activator gene (PLAT)". Nucleic Acids Res. 19:6058. (1991) Online citation.

- Tishkoff SA, Ruano G, Kidd JR, Kidd KK. "Distribution and frequency of a polymorphic Alu insertion at the plasminogen activator locus in humans". Hum. Genet. 97:759-64. (1996) Online citation.

© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan