ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the U. S. National Science Foundation.
ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
PakistaniPO000348P

Synonyms:
Geographic Location1:  37N, 61E; 23.5N, 76.5E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistani

Sample UID: SA000653O

Sample Description:This sample consists of native Pakistani individuals working in Dubai, United Arab Emerates.

Number of Chromosomes: 96

Relation to Other Samples:

References:
- Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA. "Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa ". Genome Res 7:1061-71. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistanis

Sample UID: SA001091L

Sample Description:This sample consists of unrelated Pakistanis living in Dubai.

Number of Chromosomes: 234

Relation to Other Samples:

References:
- Tahir MA, al Khayat AQ, al Shamali F, Budowle B, Novick GE. "Distribution of HLA-DQA1 alleles in Arab and Pakistani individuals from Dubai, United Arab Emirates". Forensic Sci Int. 85:219-23. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistani

Sample UID: SA003636S

Sample Description:This sample consists of control participants (UK-based n=417;Pakistan-based n=1167) recruited from the same geographical areas through community screening.

Number of Chromosomes: 1584

Relation to Other Samples:

References:
- Rees SD, Hydrie MZ, Shera AS, Kumar S, O'Hare JP, Barnett AH, Basit A, Kelly MA. "Replication of 13 genome-wide association (GWA)-validated risk variants for type 2 diabetes in Pakistani populations". Diabetologia. (Epub, ahead of print) (2011) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistan

Sample UID: SA000520H

Sample Description:This sample consists of native Pakistani individuals working in Dubai, United Arab Emerates.

Number of Chromosomes: 84

Relation to Other Samples:

References:
- Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA. "Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa ". Genome Res 7:1061-71. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistani

Sample UID: SA001302G

Sample Description:This sample consists of unrelated volunteer Pakistanis living in Abu Dhabi and Sharjah, United Arab Emirates.

Number of Chromosomes: 394

Relation to Other Samples:

References:
- Mohammed AA, Linacre AM, Vanezis P, Goodwin W. "STR data for the GenePrint PowerPlex 1.2 system loci from three United Arab Emirates populations". Forensic Sci Int. 119:328-329. (2001) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indian/Pakistani

Sample UID: SA002034J

Sample Description:This sample consists of Indian and Pakistani individuals.

Number of Chromosomes: 60

Relation to Other Samples:

References:
- Nakajima T, Wooding S, Sakagami T, Emi M, Tokunaga K, Tamiya G, Ishigami T, Umemura S, Munkhbat B, Jin F, Guan-Jun J, Hayasaka I, Ishida T, Saitou N, Pavelka K, Lalouel JM, Jorde LB, Inoue I. "Natural selection and population history in the human angiotensinogen gene (AGT): 736 complete AGT sequences in chromosomes from around the world". Am J Hum Genet 74:898-916. (2004) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistani

Sample UID: SA003142K

Sample Description:This sample consists of healthy Pakistani individuals.

Number of Chromosomes: 140

Relation to Other Samples:

References:
- Michael S, Qamar R, Akhtar F, Khan WA, Ahmed A. "C677T polymorphism in the methylenetetrahydrofolate reductase gene is associated with primary closed angle glaucoma". Mol Vis. 26:661-5. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistani

Sample UID: SA001782S

Sample Description:This sample consists of unrelated Pakistanis living in Dubai, United Arab Emirates.

Number of Chromosomes: 440

Relation to Other Samples:

References:
- Alshamali F, Alkhayat AQ, Budowle B, Watson ND. "STR population diversity in nine ethnic populations living in Dubai". Forensic Sci Int. 152:267-279. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistan

Sample UID: SA002523M

Sample Description:This sample consists of unrelated individuals from Pakistan. This sample was collected as part of anthropological surveys of investigation of non-HIV related medical conditions.

Number of Chromosomes: 68

Relation to Other Samples:

References:
- Martinson JJ, Chapman NH, Rees DC, Liu YT, Clegg JB. "Global distribution of the CCR5 gene 32-basepair deletion". Nat Genet 16:100-103. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pakistani

Sample UID: SA003731O

Sample Description:This sample consists of Pakistani individuals. They are the Arain agriculturalists from the Punjab region. This sample was collected by the Sorenson Molecular Genealogy Foundation (SMGF). Informed consent was obtained from all the study subjects at the sampling location and the western Institutional Review Board approved all procedures.

Number of Chromosomes: 50

Relation to Other Samples:

References:
- Xing J, Watkins WS, Shlien A, Walker E, Huff CD, Witherspoon DJ, Zhang Y, Simonson TS, Weiss RB, Schiffman JD, Malkin D, Woodward SR, Jorde LB. "Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping". Genomics 96:199-210. (2010) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan