ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the U. S. National Science Foundation.
ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
SamiPO000673Q

Synonyms: Lapp ; Saami ; Laplanders ;
Geographic Location1:  71N, 6E; 62N, 40E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Swedish Saamis

Sample UID: SA001859X

Sample Description:This sample consists of unrelated Saami from Lapland, Sweden.

Number of Chromosomes: 240

Relation to Other Samples:

References:
- Libert F, Cochaux P, Beckman G, Samson M, Aksenova M, Cao A, Czeizel A, Claustres M, de la Rua C, Ferrari M, Ferrec C, Glover G, Grinde B, Guran S, Kucinskas V, Lavinha J, Mercier B, Ogur G, Peltonen L, Rosatelli C, Schwartz M, Spitsyn V, Timar L, Beckman L, Parmentier M, Vassart G "The deltaccr5 mutation conferring protection against HIV-1 in Caucasian populations has a single and recent origin in Northeastern Europe". Hum Mol Genet. 7:399-406.. (1998) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Saami

Sample UID: SA003222J

Sample Description:This sample consists of Saami (Murmansk oblast), Russia.

Note: This sample information is not fully curated. For additional information about the sample, consult the publications under "References". The sample was entered as part of data submission by Eisenberg DA.

Number of Chromosomes: 112

Relation to Other Samples:

References:
- Borinskaia SA, Kal'ina NR, Sanina ED, Kozhekbaeva ZhM, Gupalo EIu, Garmash IV, Ogurtsov PP, Parshukova ON, Boĭko SG, Veselovskiĭ EM, Vershubskaia GG, Kozlov AI, Rogaev EI, Iankovskiĭ NK "Polymorphism of the apolipoprotein E gene (APOE) in the populations of Russia and neighboring countries". Genetika. 43:1434-40. (2007) Online citation.

- Eisenberg DA, Kuzawa, CW, Hayes MG "Worldwide allele frequencies of the human apolipoprotein E (APOE) gene: climate, local adaptations and evolutionary history". American Journal of Physical Anthropology 143:100-11. (2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Lapps

Sample UID: SA003374R

Sample Description:This sample consists of Lapps (Saami, Sami).

Note: This sample information is not fully curated. For additional information about the sample, consult the publications under "References". The sample was entered as part of data submission by Eisenberg DA.

Number of Chromosomes: 140

Relation to Other Samples:

References:
- Eisenberg DA, Kuzawa, CW, Hayes MG "Worldwide allele frequencies of the human apolipoprotein E (APOE) gene: climate, local adaptations and evolutionary history". American Journal of Physical Anthropology 143:100-11. (2010) Online citation.

- Lehtinen S, Luoma P, Näyhä S, Hassi J, Ehnholm C, Nikkari T, Peltonen N, Jokela H, Koivula T, Lehtimäki T. "Apolipoprotein A-IV polymorphism in Saami and Finns: frequency and effect on serum lipid levels". Ann Med. 30:218-23. (1998) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Lapps

Sample UID: SA002101E

Sample Description:This sample consists of unrelated male and female Lapps from Sweden.

Number of Chromosomes: 200

Relation to Other Samples:

References:
- Goedde HW, Agarwal DP, Fritze G, Meier-Tackmann D, Singh S, Beckmann G, Bhatia K, Chen LZ, Fang B, Lisker R "Distribution of ADH2 and ALDH2 genotypes in different populations". Hum Genet. 88:344-6. (1992) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Sami(saa)

Sample UID: SA004203J

Sample Description:This sample consists of Sami from Kola peninsula.

Number of Chromosomes: 98

Relation to Other Samples:

References:
- Pimenoff VN, Laval G, Comas D, Palo JU, Gut I, Cann H, Excoffier L, Sajantila A. "Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates". Pharmacogenet Genomics. 22:846-857. (2012) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kola Saami

Sample UID: SA002836T

Sample Description:This sample consists of Kola Saami from Russia.

Number of Chromosomes: 124

Relation to Other Samples:

References:
- Borinskaya S, Kal'ina N, Marusin A, Faskhutdinova G, Morozova I, Kutuev I, Koshechkin V, Khusnutdinova E, Stepanov V, Puzyrev V, Yankovsky N, Rogaev E. "Distribution of the alcohol dehydrogenase ADH1B*47His allele in Eurasia". Am J Hum Genet. 84:89-92. (2009) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kola Saami

Sample UID: SA003335O

Sample Description:This sample consists of Kola Sami of Lovozero settlement (Murmansk Region) - Kola Peninsula.

Note: This sample information is not fully curated. For additional information about the sample, consult the publications under "References". The sample was entered as part of data submission by Eisenberg DA.

Number of Chromosomes: 112

Relation to Other Samples:

References:
- Eisenberg DA, Kuzawa, CW, Hayes MG "Worldwide allele frequencies of the human apolipoprotein E (APOE) gene: climate, local adaptations and evolutionary history". American Journal of Physical Anthropology 143:100-11. (2010) Online citation.

- Kozlov A, Borinskaya S, Vershubsky G, Vasilyev E, Popov V, Sokolova M, Sanina E, Kaljina N, Rebrikov D, Lisitsyn D, Yankovsky N. "Genes related to the metabolism of nutrients in the Kola Sami population". Int J Circumpolar Health. 67:56-66.. (2008) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan