Sample Name: Kalash
Sample UID: SA000828S
Sample Description:This sample consists of native Kalash individuals collected mainly from the Bumburet, Birir and Rambur villages in northwestern Pakistan. The Biomedical & Genetic Engineering Laboratories in Islamabad, Pakistan is the source of the sample.
Number of Chromosomes: 102
Relation to Other Samples:
References:- Mansoor A, Mazhar K, Khaliq S, Hameed A, Rehman S, Siddiqi S, Papaioannou M, Cavalli-Sforza LL, Mehdi SQ, Ayub Q. "Investigation of the Greek ancestry of populations from northern Pakistan". Hum Genet 114:484-90. (2004) Online citation.
Sample UID: SA003076Q
Sample Description:This sample consists of healthy adults from Kalash tribe, a tribal group from northern Pakistan. Informed consent were obtained from all individuals.
Number of Chromosomes: 110
References:- Mansoor A, Mazhar K, Ali L, Muazzam AG, Siddiqi S, Usman S. "Prevalence of the C677T single-nucleotide polymorphism in the methylenetetrahydrofolate reductase gene among Pakistani ethnic groups". Genet Test Mol Biomarkers. 13:521-6. (2009) Online citation.
Sample UID: SA001910L
Sample Description:This sample consists of unrelated Kalash from the Hindu mountains and speak an Indo-European language.
Number of Chromosomes: 140
References:- Khaliq S, Hameed A, Ayub Q, Mazhar K, Mohyuddin A, Mansoor A, Mehdi SQ "Frequency of CCR5 Gene 32-bp deletion in Pakistani ethnic groups". Genet Test. 6:123-7. (2002) Online citation.
Sample Name: Kalash, HGDP-CEPH
Sample UID: SA001481O
Sample Description:This sample from Pakistan is part of the Human Genome Diversity Cell Line Panel collected by the Human Genome Diversity Project (HGDP) and the Foundation Jean Dausset (CEPH). This sample consists of unrelated individuals and was collected with proper informed consent.
Note: In many publications subset H952 of the HGDP panel (with first and second degree relatives excluded from the original set) was typed and for this population that decreases the sample size from 25 to 23 individuals. For the subset H971 of the HGDP panel with the first degree relatives excluded this decreases the sample size from 25 to 24.
Number of Chromosomes: 50
References:- Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. "Genetic structure of human populations". Science 298:2381-2385. (2002) Online citation.
- Rosenberg NA. "Standardized subsets of the HGDP-CEPH Human Genome Diversity Cell Line Panel, accounting for atypical and duplicated samples and pairs of close relatives.". Ann Hum Genet. 70:841-847. (2006) Online citation.
© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.Originally prototyped by Michael Osier with the aid of Kei CheungUpgrades and maintenance since 2002 by Haseena Rajeevan