ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the U. S. National Science Foundation.
ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
SlovaksPO000467R

Synonyms: Slovakians, Bratislava ;
Geographic Location1:  47.75N, 22.75E; 49.75N, 16.75E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Bratislava Slovakian

Sample UID: SA001453N

Sample Description:This sample consists of volunteer donors from Bratislava, Slovakia.

Number of Chromosomes: 190

Relation to Other Samples:

References:
- Liang W, Lv M, Xu Y, Liao M, Zhou B, Jia Y, Lin Z "STR Loci D19S400's allele frequency distribution in ten populations.". J Forensic Sci 50:725. (2005)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Banska Bystrika

Sample UID: SA002733P

Sample Description:This sample consists of participants from Banska Bystrika, Slovakia who were recruited as part of multi-centre case-control study in 5 centres from 5 central and eastern european countries. The participants were controls for a study on aerodigestive cancers and were interviewed with a structured questionnaire on residential and lifestyle history by the same team of interviewers in each centre.

Number of Chromosomes: 386

Relation to Other Samples:

References:
- Hashibe M, McKay JD, Curado MP, Oliveira JC, Koifman S, Koifman R, Zaridze D, Shangina O, Wünsch-Filho V, Eluf-Neto J, Levi JE, Matos E, Lagiou P, Lagiou A, Benhamou S et.al. "Multiple ADH genes are associated with upper aerodigestive cancers". Nat Genet. 40:707-9. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Slovaks

Sample UID: SA002374Q

Sample Description:This sample consists of HIV negative (95 men and 41 women) Slovaks.

Number of Chromosomes: 272

Relation to Other Samples:

References:
- Nogova P, Habekova M, Stanekova D "Prevalence 32bp deletion in gene for HIV coreceptor CCR%-del32 in the Slovak population". Lekarsky obzor 56:155-158. (2007)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Slovaks

Sample UID: SA003990V

Sample Description:This sample consists of corneal donors from the Slovak Republic Ministry of Health.

Number of Chromosomes: 1226

Relation to Other Samples:

References:
- Mitrová E, Mayer V, Jovankovicová V, Slivarichová D, Wsólová L. "Creutzfeldt-Jakob disease risk and PRNP codon 129 polymorphism: necessity to revalue current data". Eur J Neurol. 12:998-1001. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Slovakian

Sample UID: SA002473Q

Sample Description:This sample consists of Slovakians.

Number of Chromosomes: 60

Relation to Other Samples:

References:
- Stephens JC, Reich DE, Goldstein DB, Shin HD, Smith MW et.al. "Dating the origin of the CCR5-Delta32 AIDS-resistance allele by the coalescence of haplotypes". Am J Hum Genet. 62:1507-15. (1998) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Slovak-Caucasians

Sample UID: SA003064N

Sample Description:This sample consists of Slovak-Caucasians who were participants of the Countrywide Integrated Noncommunicable Diseases Intervention (CINDI) survey from Banska bystrica in Central Slovakia.

Number of Chromosomes: 702

Relation to Other Samples:

References:
- Gasparovic J, Raslová K, Basistová Z, Zacharová M, Wsólová L, Avdicová M, Blazícek P, Lietava J, Siváková D. "Effect of C677T methylenetetrahydrofolate reductase gene polymorphism on plasma homocysteine levels in ethnic groups". Physiol Res. 53:215-8. (2004) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Slovaks

Sample UID: SA003093P

Sample Description:This sample consists of 149 boys (range 11-18 years) and 237 girls (age range 11-18 years) examined as part of a prospective study of the Research Institute of Nutrition of School population in Brastislava in different regions of Slovakia.

Number of Chromosomes: 772

Relation to Other Samples:

References:
- Raslová K, Bederová A, Gasparovic J, Blazícek P, Smolková B "Effect of diet and 677 C-->T 5, 10-methylenetetrahydrofolate reductase genotypes on plasma homocyst(e)ine concentrations in slovak adolescent population". Physiol Res. 49:651-8. (2000) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Slovakians, Bratislava

Sample UID: SA000926R

Sample Description:This sample consists of unrelated Slovaks from Bratislava, Slovakia. This sample was collected from blood banks. Ethnic origin was determined by self declaration.

Number of Chromosomes: 180

Relation to Other Samples:

References:
- Hou YP, Jin ZM, Li YB, Wu J, Walter H, Kido A, Prinz M. "D20S161 data for three ethnic populations and forensic validation". Int J Legal Med 112:400-402. (1999) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan