ALFRED detailed record information
|Name||ALFRED UID||Locus Name||Locus Symbol |
|TaqI ||SI000166N||Homeo box B3||HOXB3|
Synonyms: rs4646992 ;
|Fst||Avg Het||# Populations Typed|
Frequency Display Formats:
External Resources: Genbank sequence Record Typing Protocol Record GenBank sequence Record dbSNP ss# Record PharmGKB Variant Information Record
References: See References
Polymorphism Description: An A/G SNP in intron 1 of HOXB3 created by the disruption of the ancestral TaqI recognition site, TCGA, to TCAA. The alleles are coded as "1" (site absent) and "2" (site present). With the protocol provided, the site-absent allele gives a 316 bp fragment and the site-present allele gives 200 bp and 116 bp fragments following digestion with TaqI.
Ancestral Allele: Site Present
Ancestral Allele Determine by: Digestion of PCR Product on primate DNA
|Allele Name||Allele Symbol||Description|
|TaqI Site Absent||A||5'-ctggggggtgg TC A A aggtggaaaa-3'|
|TaqI Site Present||G||5'-ctggggggtgg TC G A aggtggaaaa-3'|
- Ogura T, Castiglione CM, Pakstis AJ, Kidd KK. "Two RFLPs at the HOX2G locus". Nucleic Acids Res. 19:1716. (1991) Online citation.
© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan