ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the U. S. National Science Foundation.
ALFRED detailed record information

Polymorphism Information

NameALFRED UIDLocus NameLocus Symbol
MspI SI000324J5-hydroxytryptamine (serotonin) receptor 2AHTR2A
FstAvg Het# Populations Typed
0.1080.43485
Synonyms: T2 ; rs6313 ;
Frequency on Map:    
Frequency Display Formats:     
Estimated Heterozygosity: 
Frequency Download:   
External Resources: dbSNP rs# Record  PharmGKB Variant Information Record  
References: See References
Polymorphism Description:  A T/C SNP altering a MspI restriction site. This polymorphism is located at position 102. Both allele (TCT) and allele (TCC) encode for a serine at amino acid #34.
Alleles:
Allele NameAllele SymbolDescription
CC
TT

References:
- Chakrabarti CS, Roy M, Sengupta NK, Lalthantluanga R, Majumder PP. "Genetic relationships among some tribal groups inhabiting the north-eastern, eastern and sub-Himalayan regions of India". Ann Hum Genet 66:361-368. (2002)
Online citation.

- Jorde LB, Bamshad MJ, Watkins WS, Zenger R, Fraley AE, Krakowiak PA, Carpenter KD, Soodyall H, Jenkins T, Rogers AR. "Origins and affinities of modern humans: a comparison of mitochondrial and nuclear genetic data.". Am. J. Hum. Genet. 57:523-538. (1995) Online citation.

- Warren JT Jr, Peacock ML, Rodriguez LC, Fink JK. "An MspI polymorphism in the hyman serotonin receptor gene (HTR2): detection by DGGE and RFLP analysis". Hum. Mol. Genet. 2:338. (1993) Online citation.


© 2014 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan