ALFRED: allele frequency database

The ALlele FREquency Database
ALFRED is a resource of gene frequency data on human populations
supported by the U. S. National Science Foundation.

ALFRED detailed record information

Polymorphism Information

Name	ALFRED UID	Locus Name	Locus Symbol
C___7563692_10	SI000933P	Microtubule-associated protein tau	MAPT

Fst	Avg Het	# Populations Typed
0.128	0.108	48

Synonyms: rs1800547 ;
Frequency Display Formats:

Estimated Heterozygosity:

Frequency Download:

External Resources: GenBank sequence Record GenBank sequence Record GenBank sequence Record GenBank sequence Record dbSNP ss# Record PharmGKB Variant Information Record
References: See References
Polymorphism Description: C___7563692_10 is an ABI Assays-on-Demand^TM SNP Genotyping Assay ID. This is A/G SNP located in intron region of the gene MAPT.

Frequencies in ALFRED for several samples for this site were cited in Stefansson et. al. "A common inversion under selection in Europeans" Nature Genetics (2005). Upon checking the frequencies in ALFRED some populations were found to be incorrect. The incorrect frequencies have been deleted and the correct frequencies entered. Frequencies have been corrected for the following samples: Mbuti Pygmies (SA000006G), Chagga (SA000487T), Jews, Ethiopian (SA000015G), Adygei (SA000017I), Danes (SA000046K), San Francisco Chinese (SA00009J), Ami (SA000002C), Karitiana (SA000028K).

Alleles:

Allele Name	Allele Symbol	Description
A	A	5'-cccagaaggaaccacaggtgagggt A agccccagagacccccaggcagtca-3'
G	G	5'-cccagaaggaaccacaggtgagggt G agccccagagacccccaggcagtca-3'

References:
- Kenneth K. Kidd et al. "Data unpublished".

© 2012 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan