ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.

High Throughput Data Sets

Population InfoSNP CountCitation Reference
Illumina HumanHap650K Beadchip52 Human Genome Diversity Panel (HGDP) samples649,984Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, Ramachandran S, Cann HM, Barsh GS, Feldman M, Cavalli-Sforza LL, Myers RM "Worldwide human relationships inferred from genome-wide patterns of variation". Science. 319:1100-4. (2008)
Illumina 650K marker set dataKiddLab Korean samples649,978Kidd Lab 'Unpublished data'
Illumina BeadLab 1000 platform (GoldenGate genotyping data on 3,204 markers)55 worldwide population samples (53 HGDP populations +Tamil and Bengali populations from India)2,810Pemberton TJ, Jakobsson M, Conrad DF, Coop G, Wall JD, Pritchard JK, Patel PI, Rosenberg NA. "Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India". Ann Hum Genet. 72:535-46.. (2008)
Illumina Human370CNV duo chipEstonian population sample297,922Nelis M et al. "Genetic structure of Europeans: a view from the North-East". PLos one 4:e5472. (2009)
Marshfield screening set #10 (377 polymorphic di, tri, and tetra nucleotide repeats51 World wide HGDP population samples397Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. "Genetic structure of human populations". Science 298:2381-2385. (2002)
Affymetrix 10K Array Xba 13112 population samples11,555Shriver MD, Mei R, Parra EJ, Sonpar V, Halder I, Tishkoff SA, Schurr TG, Zhadanov SI, Osipova LP, Brutsaert TD, Friedlaender J, Jorde LB, Watkins WS, Bamshad MJ, Gutierrez G, Loi H, Matsuzaki H, Kittles RA, Argyropoulos G, Fernandez JR, Akey JM, Jones KW. "Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation". Hum Genomics. 2:81-89.(2005)

© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan