ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Locus Information

NameALFRED UIDLocus SymbolChromosomeBand Position
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)LO003087SGALNT211q41-q42
Synonyms: GalNAc-T2 ;
Sites List: 
See Sites List
External Resources: Entrez Gene Locus Information   
References: See References
Locus Description: This gene encodes polypeptide N-acetylgalactosaminyltransferase 2, a member of the GalNAc-transferases family. This family transfers an N-acetyl galactosamine to the hydroxyl group of a serine or threonine residue in the first step of O-linked oligosaccharide biosynthesis. Individual GalNAc-transferases have distinct activities and initiation of O-glycosylation in a cell is regulated by a repertoire of GalNAc-transferases.
Sites within this locus ordered by their chromosomal position in the 37.3 NCBI build:
Site Name
(Navigates to ALFRED
description)
dbSNP rs#
(Navigates to dbSNP
reference page)
Chr-PositionStatus# Populations
typed
rs1321258rs1321258   230202028114
rs1474925rs1474925   230207433114
rs2883025rs2883025   23020837275
rs13375918rs13375918   23020931350
rs6684432rs6684432   230209790114
rs6673349rs6673349   23021139875
rs910820rs910820   230214319114
rs16850873rs16850873   23022031175
rs11122300rs11122300   23022116575
rs7520640rs7520640   23022898075
rs2057233rs2057233   230232790114
rs11122314rs11122314   230236011114
rs11122316rs11122316   23023710375
rs12035297rs12035297   23023882178
rs910501rs910501   230244869114
rs6659923rs6659923   23024756475
rs7550262rs7550262   23024873975
rs754666rs754666   230250182116
rs2144297rs2144297   23026384478
rs11122361rs11122361   23026395978
rs6667736rs6667736   230264619114
rs7541570rs7541570   230265342114
rs1884578rs1884578   23026720976
rs1973943rs1973943   230272063114
rs4846904rs4846904   230279410116
rs4846908rs4846908   230285056114
rs1998064rs1998064   230287128114
rs2352723rs2352723   23029186875
rs10779835rs10779835   230299949114
rs2296065rs2296065   23030177676
rs10489615rs10489615   23030498875
rs1321257rs1321257   23030531214
rs966333rs966333   23030547714
rs627108rs627108   23031056814
rs1124110rs1124110   230310972123
rs678050rs678050   23031391178
rs611229rs611229   230324067116
rs4846930rs4846930   230346829114
rs4846935rs4846935   23034795275
rs910497rs910497   230351357114
rs6703306rs6703306   23035182978
rs10864731rs10864731   23035650778
rs10864732rs10864732   23035681776
rs4846846rs4846846   230360733116
rs3811486rs3811486   23037206175
rs12076454rs12076454   23037866375
rs1923950rs1923950   230384970114
rs3789630rs3789630   23038749875
rs3789632rs3789632   23038810575
rs656029rs656029   23038983875
rs901675rs901675   23039000270
rs632557rs632557   23039810275
rs3811485rs3811485   230398445114
rs7552730rs7552730   23040053175
rs1471916rs1471916   23040253976
rs1471915rs1471915   23040262475
rs9432145rs9432145   230402926114
rs12139970rs12139970   230406460114
rs11576324rs11576324   23040885875
rs11588358rs11588358   23040905875
rs12091838rs12091838   230410162114
rs2273970rs2273970   230415148114
rs2273967rs2273967   23041529375
rs3213495rs3213495   23041603875
rs13728rs13728   230416218114
rs1043900rs1043900   23041674475
rs13490rs13490   23041676075
rs1043908rs1043908   23041729475
rs9431818rs9431818   23041799975
rs12757317rs12757317   230419308114
rs4846948rs4846948   23042037075
rs7511943rs7511943   23042147775
rs6541309rs6541309   23042150350
rs6541310rs6541310   230421520114
rs6687864rs6687864   23042172275
rs17762687rs17762687   230422031114

References:
- Shriver MD, Mei R, Parra EJ, Sonpar V, Halder I, Tishkoff SA, Schurr TG, Zhadanov SI, Osipova LP, Brutsaert TD, Friedlaender J, Jorde LB, Watkins WS, Bamshad MJ, Gutierrez G, Loi H, Matsuzaki H, Kittles RA, Argyropoulos G, Fernandez JR, Akey JM, Jones KW. "Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation". Hum Genomics. 2:81-89. (2005)
Online citation.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan