ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
Cypriot, TurkishPO000332I

Synonyms:
Geographic Location1:  35.75N, 32.25E; 34.5N, 34.75E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Turkish Cypriots

Sample UID: SA000668U

Sample Description:This sample was collected on the island of Cyprus and is composed of individuals from Turkish-Cypriot communities.

Number of Chromosomes: 118

Relation to Other Samples: Superset of sample SA000499W

References:
- Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA "High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils". J Mol Biol 281:843-56. (1998) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Turkish Cypriot

Sample UID: SA000700H

Sample Description:This sample was collected on the island of Cyprus and is composed of individuals from Turkish-Cypriot communities.

Number of Chromosomes: 118

Relation to Other Samples: Superset of sample SA000499W

References:
- Batzer MA, Stoneking M, Alegria-Hartman M, Bazan H, Kass DH, Shaikh TH, Novick GE, Ioannou PA, Scheer WD, Herrera RJ, Deininger PL. "African origin of human-specific polymorphic Alu insertions". Proc Natl Acad Sci USA 91:12288-12292. (1994) Online citation.

- Romualdi C, Balding D, Nasidze IS, Risch G, Robichaux M, Sherry ST, Stoneking M, Batzer MA, Barbujani G. "Patterns of human diversity, within and among continents, inferred from Biallilic DNA polymorphisms". Genome Res 12:602-612. (2002) Online citation.

- Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA. "Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa ". Genome Res 7:1061-71. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Turkish Cypriots

Sample UID: SA000499W

Sample Description:This sample was collected on the island of Cyprus and is composed of individuals from Turkish-Cypriot communities.

Number of Chromosomes: 66

Relation to Other Samples:

References:
- Batzer MA, Stoneking M, Alegria-Hartman M, Bazan H, Kass DH, Shaikh TH, Novick GE, Ioannou PA, Scheer WD, Herrera RJ, Deininger PL. "African origin of human-specific polymorphic Alu insertions". Proc Natl Acad Sci USA 91:12288-12292. (1994) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Turkish Cypriot

Sample UID: SA000556Q

Sample Description:This sample was collected on the island of Cyprus and is composed of individuals from Turkish-Cypriot communities.

Number of Chromosomes: 118

Relation to Other Samples: Superset of sample SA000499W

References:
- Batzer MA, Stoneking M, Alegria-Hartman M, Bazan H, Kass DH, Shaikh TH, Novick GE, Ioannou PA, Scheer WD, Herrera RJ, Deininger PL. "African origin of human-specific polymorphic Alu insertions". Proc Natl Acad Sci USA 91:12288-12292. (1994) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Turkish Cypriot

Sample UID: SA000593R

Sample Description:This sample was collected on the island of Cyprus and is composed of individuals from Turkish-Cypriot communities.

Number of Chromosomes: 120

Relation to Other Samples: Superset of sample SA000499W

References:
- Batzer MA, Stoneking M, Alegria-Hartman M, Bazan H, Kass DH, Shaikh TH, Novick GE, Ioannou PA, Scheer WD, Herrera RJ, Deininger PL. "African origin of human-specific polymorphic Alu insertions". Proc Natl Acad Sci USA 91:12288-12292. (1994) Online citation.

- Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA. "Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa ". Genome Res 7:1061-71. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Cyprus (Turkish)

Sample UID: SA002230H

Sample Description:This sample consists of unrelated Turkish individuals from Cyprus. Informed consent were obtained from all individuals.

Number of Chromosomes: 94

Relation to Other Samples: Subset of sample SA000593R

References:
- Salem AH, Batzer MA. "Distribution of the HIV resistance CCR5-Delta32 allele among Egyptians and Syrians". Mutat Res. 616:175-80. (2007) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Cyprus

Sample UID: SA004012H

Sample Description:This sample consists of Turkish Cypriots.

Number of Chromosomes: 198

Relation to Other Samples:

References:
- Mercier G, Diéterlen F, Lucotte G. "Population distribution of the methionine allele at the PRNP codon 129 polymorphism in Europe and the Middle East". Hum Biol. 80:181-90. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Turkish Cypriots

Sample UID: SA004333N

Sample Description:This sample consists Turkish Cypriots collected from Nicosia, North Cyprus. This sample was collected by Cemal Gurkan, Turkish Cypriot DNA Lab, Nicosia, North Cyprus.

Number of Chromosomes: 120

Relation to Other Samples:

References:
- Pakstis AJ , Haigh E, Cherni L, Ben Ammar ElGaaied A, Barton A, Evsanaa B, Togtokh A, Brissenden J, Roscoe J, Bulbul O, Filoglu G, Gurkan C, Meiklejohn KA, Robertson JM, Li,C.-X. Wei Y.-L., Li H,Soundararajan U,Rajeevan H, Kidd JR, Kidd KK "52 additional reference population samples for the 55 AISNP panel". Forensic Science International: Genetics 269-271. (2015) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan