ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
KyrgyzPO000478T

Synonyms: Kirgiz, Kirghiz ;
Geographic Location1:  43.5N, 69E; 39.25N, 81E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kyrgyzes, North

Sample UID: SA000977X

Sample Description:This sample consists of unrelated individuals from Bishkek, Kyrgystan (Central Asia).

Number of Chromosomes: 100

Relation to Other Samples:

References:
- Khitrinskaya IYu, Stepanov VA, Puzyrev VP, Spiridonova MG, Voevoda MI. "Genetic Differentiation of the Population of Central Asia Inferred from Autosomal Markers". Russian Journal of Genetics 39:1175-1183. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kyrgyzes, South

Sample UID: SA000978Y

Sample Description:This sample consists of unrelated individuals from Osh and Dzhelal-Abad, Kyrgystan (Central Asia).

Number of Chromosomes: 110

Relation to Other Samples:

References:
- Khitrinskaya IYu, Stepanov VA, Puzyrev VP, Spiridonova MG, Voevoda MI. "Genetic Differentiation of the Population of Central Asia Inferred from Autosomal Markers". Russian Journal of Genetics 39:1175-1183. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Southern Kygyzes

Sample UID: SA003090M

Sample Description:This sample consists of Kygyzes from the city of Osh, Kyrgyzstan.

Number of Chromosomes: 222

Relation to Other Samples:

References:
- Trifonova EA, Spiridonova MG, Stepanov VA "Genetic diversity and the structure of linkage disequilibrium in the methylenetetrahydrofolate reductase locus". Genetika. 44:1410-9. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Northern Kygyzes

Sample UID: SA003091N

Sample Description:This sample consists of Kygyzes from the city of Bishkek, Kirghizia.

Number of Chromosomes: 170

Relation to Other Samples:

References:
- Trifonova EA, Spiridonova MG, Stepanov VA "Genetic diversity and the structure of linkage disequilibrium in the methylenetetrahydrofolate reductase locus". Genetika. 44:1410-9. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Southern Kygyzes

Sample UID: SA002851Q

Sample Description:This sample consists of Southern Kygyzes from the city of Osh, Kyrgyzstan.

Number of Chromosomes: 222

Relation to Other Samples:

References:
- Trifonova EA, Spiridonova MG, Stepanov VA "Genetic diversity and the structure of linkage disequilibrium in the methylenetetrahydrofolate reductase locus". Genetika. 44:1410-9.. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Northern Kygyzes

Sample UID: SA002852R

Sample Description:This sample consists of Northern Kygyzes from the city of Bishkek, Kirghizia.

Number of Chromosomes: 170

Relation to Other Samples:

References:
- Trifonova EA, Spiridonova MG, Stepanov VA "Genetic diversity and the structure of linkage disequilibrium in the methylenetetrahydrofolate reductase locus". Genetika. 44:1410-9.. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kirgiz

Sample UID: SA002641N

Sample Description:This sample consists of healthy, unrelated Kirgiz individuals from Wuqia county of Xinjiang province, China. Each individual was the offspring of a non-consanguineous marriage of members of the same nationality within three generations. Informed consent from the participants and the approval of appropriate local authority were obtained.

Number of Chromosomes: 84

Relation to Other Samples:

References:
- Mao R, Fan Y, Chen F, Fu S. "Genetic polymorphism of MTHFR G1793A in Chinese populations". Eur J Epidemiol. (Epub ahead of print) (2008)

- Mao R, Fan Y, Chen F, Sun D, Bai J, Fu S. "Methylenetetrahydrofolate reductase gene polymorphisms in 13 Chinese ethnic populations.". Cell Biochem Funct. 26:352-8. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kirghizs

Sample UID: SA002818T

Sample Description:This sample consists of Kirghizs from Kirghizia.

Number of Chromosomes: 204

Relation to Other Samples:

References:
- Borinskaya S, Kal'ina N, Marusin A, Faskhutdinova G, Morozova I, Kutuev I, Koshechkin V, Khusnutdinova E, Stepanov V, Puzyrev V, Yankovsky N, Rogaev E. "Distribution of the alcohol dehydrogenase ADH1B*47His allele in Eurasia". Am J Hum Genet. 84:89-92. (2009) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kyrgyzstani

Sample UID: SA003732P

Sample Description:This sample consists of Kyrgyzstani individuals. This sample was collected from Bishkek, the capital of Kyrgyzstan, having origins in several states in northeast Kyrgyzstan. This sample was collected by the Sorenson Molecular Genealogy Foundation (SMGF). Informed consent was obtained from all the study subjects at the sampling location and the western Institutional Review Board approved all procedures.

Number of Chromosomes: 50

Relation to Other Samples:

References:
- Xing J, Watkins WS, Shlien A, Walker E, Huff CD, Witherspoon DJ, Zhang Y, Simonson TS, Weiss RB, Schiffman JD, Malkin D, Woodward SR, Jorde LB. "Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping". Genomics 96:199-210. (2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kirgiz in Xinjiang, China(CZX)

Sample UID: SA004410J

Sample Description:This sample consists of Kirghiz individuals from Xinjiang Province, China.

Number of Chromosomes: 100

Relation to Other Samples: Superset of sample SA004325O

References:
- Wei YL, Wei L, Zhao L, Sun QF, Jiang L, Zhang T, Liu HB, Chen JG, Ye J, Hu L, Li CX "A single-tube 27-plex SNP assay for estimating individual ancestry and admixture from three continents". Int J Legal Med. 130:27-37. (2016) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kyrgyz

Sample UID: SA004597Z

Sample Description:This sample consists of Kyrgyz individuals from Central Asia. To limit influence of admixture this sample included villagers who reportedly were settled in the sample place for at least three generations (up to grandparents) .This sample is part of the "core" data set that were genotyped for this study.

Number of Chromosomes: 56

Relation to Other Samples:

References:
- Triska P, Chekanov N, Stepanov V, Khusnutdinova EK, Kumar GPA, Akhmetova V, Babalyan K, Boulygina E, Kharkov V, Gubina M, Khidiyatova , Khitrinskaya , Khrameeva EE, Khusainova R, Konovalova N, Litvinov S, Marusin A, Mazur AM, Puzyrev V, Ivanoshchuk D, Spiridonova M, Teslyuk A, Tsygankova S, Triska M, Trofimova N, Vajda E, Balanovsky O, Baranova A, Skryabin K, Tatarinova TV, Prokhortchouk E "Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe". BMC Genet 18:(2017) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kirghiz

Sample UID: SA004325O

Sample Description:This sample consists of Kirghiz individuals from Xinjiang Province, China.

Number of Chromosomes: 60

Relation to Other Samples:

References:
- Pakstis AJ , Haigh E, Cherni L, Ben Ammar ElGaaied A, Barton A, Evsanaa B, Togtokh A, Brissenden J, Roscoe J, Bulbul O, Filoglu G, Gurkan C, Meiklejohn KA, Robertson JM, Li,C.-X. Wei Y.-L., Li H,Soundararajan U,Rajeevan H, Kidd JR, Kidd KK "52 additional reference population samples for the 55 AISNP panel". Forensic Science International: Genetics 269-271. (2015) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kirgiz in Xinjiang, China(CZX)

Sample UID: SA004657W

Sample Description:This sample consists of Kirgiz individuals from Xinjiang Province,China. Written informed consent was obtained from all individuals. This sample is superset of samples SA004410J. This sample is part of Caixia Li's group in Institute of Forensic Science, Beijing, China.

Number of Chromosomes: 624

Relation to Other Samples: Superset of SA004410J

References:
- Jiang L, Wei YL, Zhao L, Li N, Liu T, Liu HB, Ren LJ, Li JL, Hao HF, Li Q, Li CX. "Global analysis of population stratification using a smart panel of 27 continental ancestry-informative SNPs". Forensic Sci Int Genet. 35:e10-e12. (2018) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Kyrgyzstan (KRG)

Sample UID: SA004658X

Sample Description:This sample consists of individuals from Kyrgyzstan. Written informed consent was obtained from all individuals. This sample is part of Caixia Li's group in Institute of Forensic Science, Beijing, China.

Number of Chromosomes: 524

Relation to Other Samples:

References:
- Jiang L, Wei YL, Zhao L, Li N, Liu T, Liu HB, Ren LJ, Li JL, Hao HF, Li Q, Li CX. "Global analysis of population stratification using a smart panel of 27 continental ancestry-informative SNPs". Forensic Sci Int Genet. 35:e10-e12. (2018) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan