ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
ColombianPO000503I

Synonyms:
Geographic Location1:  12.5N, 79W; 4.5S, 67W  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian

Sample UID: SA001089S

Sample Description:This sample consists of unrelated Colombian donors from the Department of Boyaca, Colombia. Samples were obtained in the genetics laboratory of the UIS (Universidad Industrial of Santander) and Boyaca Regional ICBF (Instituto Colombiano de Bienstar Familiar).

Number of Chromosomes: 366

Relation to Other Samples:

References:
- Vargas CI, Castillo A, Gil AM, Pico AL, Garcia O. "Allele frequencies for the AmpFlSTR profiler loci in a Colombian population (Department of Boyaca)". J Forensic Sci. 47:406-407. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Bogota

Sample UID: SA001097R

Sample Description:This sample consists of unrelated individuals listing their birthplace as Bogota, Colombia.

Number of Chromosomes: 300

Relation to Other Samples:

References:
- Rey M, Gutierrez A, Schroeder B, Usaquen W, Carracedo A, Bustos I, Giraldo A. "Allele frequencies for 13 STR's from two Colombian populations: Bogota and Boyaca". Forensic Sci Int. 136:83-85. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Boyaca

Sample UID: SA001098S

Sample Description:This sample consists of unrelated individuals listing their birthplace as Boyaca, Colombia.

Number of Chromosomes: 240

Relation to Other Samples:

References:
- Rey M, Gutierrez A, Schroeder B, Usaquen W, Carracedo A, Bustos I, Giraldo A. "Allele frequencies for 13 STR's from two Colombian populations: Bogota and Boyaca". Forensic Sci Int. 136:83-85. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Santander

Sample UID: SA001327N

Sample Description:This sample consists of unrelated donors from the Department of Santander in the northeast region of Columbia.

Number of Chromosomes: 2626

Relation to Other Samples:

References:
- Vargas CI, Castillo A, Lemus M, Gil AM, Pico AL, Garcia O. "HLA-DQA1 and polymarker locus allele frequencies in the northeast region of Colombia (Departments of Santander, Norte de Santander, Boyaca and Casanare)". J Forensic Sci. 48:440-441. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Boyaca

Sample UID: SA001328O

Sample Description:This sample consists of unrelated donors from the Department of Boyaca in the northeast region of Columbia.

Number of Chromosomes: 1174

Relation to Other Samples:

References:
- Vargas CI, Castillo A, Lemus M, Gil AM, Pico AL, Garcia O. "HLA-DQA1 and polymarker locus allele frequencies in the northeast region of Colombia (Departments of Santander, Norte de Santander, Boyaca and Casanare)". J Forensic Sci. 48:440-441. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Norte de Santander

Sample UID: SA001329P

Sample Description:This sample consists of unrelated donors from the Department of Norte de Santander in the northeast region of Columbia.

Number of Chromosomes: 676

Relation to Other Samples:

References:
- Vargas CI, Castillo A, Lemus M, Gil AM, Pico AL, Garcia O. "HLA-DQA1 and polymarker locus allele frequencies in the northeast region of Colombia (Departments of Santander, Norte de Santander, Boyaca and Casanare)". J Forensic Sci. 48:440-441. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Casanare

Sample UID: SA001330H

Sample Description:This sample consists of unrelated donors from the Department of Casanare in the northeast region of Columbia.

Number of Chromosomes: 188

Relation to Other Samples:

References:
- Vargas CI, Castillo A, Lemus M, Gil AM, Pico AL, Garcia O. "HLA-DQA1 and polymarker locus allele frequencies in the northeast region of Colombia (Departments of Santander, Norte de Santander, Boyaca and Casanare)". J Forensic Sci. 48:440-441. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian, Caucasian

Sample UID: SA001333K

Sample Description:This sample consists of unrelated Caucasian individuals from Antioquia, Colombia.

Number of Chromosomes: 520

Relation to Other Samples:

References:
- Builes JJ, Moreno MA, Gaviria AM, Espinal C, Cuartas AE, Figueroa EE, Bravo ML. "Polymarker, HLA-DQAalpha, and D1S80 allele frequency data in Antioquia (Colombia) population". J Forensic Sci. 47:902-903. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Bogota ,D.C.

Sample UID: SA001545P

Sample Description:This sample consists of unrelated individuals from capital city Bogota , D.C, Colombia.

Number of Chromosomes: 5202

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Valle del Cauca

Sample UID: SA001546Q

Sample Description:This sample consists of unrelated individuals from the department of Valle del Cauca , Colombia.

Number of Chromosomes: 2062

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian

Sample UID: SA001645Q

Sample Description:This sample consists of Colombian individuals.

Number of Chromosomes: 34

Relation to Other Samples:

References:
- Yoshiura KI et al. "A SNP in the ABCC11 gene is the determinant of human earwax type.". Nat Genet. 38:324-330. (2006) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Boyaca

Sample UID: SA001547R

Sample Description:This sample consists of unrelated individuals from the department of Boyaca, Colombia.

Number of Chromosomes: 1715

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Santander

Sample UID: SA001548S

Sample Description:This sample consists of unrelated individuals from the department of Santander, Colombia.

Number of Chromosomes: 1200

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Tolima

Sample UID: SA001549T

Sample Description:This sample consists of unrelated individuals from the department of Tolima , Colombia.

Number of Chromosomes: 1074

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Cundinamarca

Sample UID: SA001550L

Sample Description:This sample consists of unrelated individuals from the department of Cundinamarca, Colombia.

Number of Chromosomes: 1016

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Norte de Satander

Sample UID: SA001551M

Sample Description:This sample consists of unrelated individuals from the department of Norte de Satander, Colombia.

Number of Chromosomes: 740

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian

Sample UID: SA001795W

Sample Description:This sample consists of unrelated individuals living in Colombia, from two different locations: Santa Marta City on the Caribbean Coast (N=97) and San Andreas Island in the Caribbean Sea (N=27).

Number of Chromosomes: 248

Relation to Other Samples:

References:
- Martinez B, Caraballo L, Gusmao L, Amorim A, Carracedo A. "Autosomic STR population data in two Caribbean samples from Colombia". Forensic Sci Int. 152:79. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Antioquia

Sample UID: SA001943R

Sample Description:This sample consists of unrelated healthy donors living in Antioquia, a department of Colombia.

Number of Chromosomes: 1126

Relation to Other Samples:

References:
- Palacio OD, Triana O, Gaviria A, Ibarra AA, Ochoa LM, Posada Y, Maya MC, Lareu MV, Brion M, Acosta MA, Carracedo A. "Autosomal microsatellite data from Northwestern Colombia". Forensic Sci Int. 160:217-220. (2006) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Choco

Sample UID: SA001944S

Sample Description:This sample consists of unrelated healthy donors living in Choco, a department of Colombia.

Number of Chromosomes: 180

Relation to Other Samples:

References:
- Palacio OD, Triana O, Gaviria A, Ibarra AA, Ochoa LM, Posada Y, Maya MC, Lareu MV, Brion M, Acosta MA, Carracedo A. "Autosomal microsatellite data from Northwestern Colombia". Forensic Sci Int. 160:217-220. (2006) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Cundinamarca

Sample UID: SA001945T

Sample Description:This sample consists of unrelated healthy donors living in Cundinamarca, a department of Colombia.

Number of Chromosomes: 784

Relation to Other Samples:

References:
- Palacio OD, Triana O, Gaviria A, Ibarra AA, Ochoa LM, Posada Y, Maya MC, Lareu MV, Brion M, Acosta MA, Carracedo A. "Autosomal microsatellite data from Northwestern Colombia". Forensic Sci Int. 160:217-220. (2006) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Northeast Colombian

Sample UID: SA001731M

Sample Description:This sample consists of unrelated individuals from Department of Santander, Colombia.

Number of Chromosomes: 208

Relation to Other Samples:

References:
- Vargas CI, Castillo A, Gil AM, Pico AL, Garcia O "Genetic variation for penta D and penta E in a northeast Colombian population (Department of Santander).". J Forensic Sci. 51:438-9. (2006) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Bogota

Sample UID: SA001394R

Sample Description:This sample consists of unrelated individuals from Bogota , Colmbia. The age of the sample ranged from 17 to 58 years.

Number of Chromosomes: 246

Relation to Other Samples:

References:
- Duran R, Ruiz-Garcia M "Genetic population history relationships of the population of Bogota, Colombia, by using the D1S80, VWA, and TH01 molecular markers". Am J Hum Biol. 13:374-83. (2001) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian

Sample UID: SA001852Q

Sample Description:This sample consists of unrelated individuals from Cartagena (Colombia), a tropical city of the Caribbean Coast.

Number of Chromosomes: 430

Relation to Other Samples:

References:
- Martinez B, Caraballo L, Baron F, Gusmao L, Amorim A, Carracedo A. "Analysis of STR loci in Cartagena, a Caribbean city of Colombia". Forensic Sci Int. 160:221-223. (2006) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Cesar

Sample UID: SA001538R

Sample Description:This sample consists of unrelated individuals from the department of Cesar, Colombia.

Number of Chromosomes: 678

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Meta

Sample UID: SA001539S

Sample Description:This sample consists of unrelated individuals from the department of Meta, Colombia.

Number of Chromosomes: 664

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Magdalena

Sample UID: SA001540K

Sample Description:This sample consists of unrelated individuals from the department of Magdalena, Colombia.

Number of Chromosomes: 552

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Narino

Sample UID: SA001541L

Sample Description:This sample consists of unrelated individuals from the department of Narino, Colombia.

Number of Chromosomes: 452

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Casanare

Sample UID: SA001542M

Sample Description:This sample consists of unrelated individuals from the department of Casanare, Colombia.

Number of Chromosomes: 422

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Atlantico

Sample UID: SA001543N

Sample Description:This sample consists of unrelated individuals from the department of Atlantico, Colombia.

Number of Chromosomes: 380

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Guajira

Sample UID: SA001544O

Sample Description:This sample consists of unrelated individuals from the department of Guajira, Colombia.

Number of Chromosomes: 194

Relation to Other Samples:

References:
- Yunis JJ, Garcia O, Cuervo AG, Guio E, Pineda CR, Yunis EJ. "Population data for PowerPlex 16 in thirteen departments and the capital city of Colombia". J Forensic Sci. 50:685-702. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian Mestizos (Coffee area)

Sample UID: SA002942R

Sample Description:This sample consists of unrelated, healthy Mestizos (a widely used description in Colombia denoting mixed descent American -European - African ancestry) who were born in the coffee area comprising the Caldas (n=23), Quindio(n=15) and Risaralda(n=28) regions.

Number of Chromosomes: 132

Relation to Other Samples:

References:
- Porras L, Phillips C, Fondevila M, Beltran L, Ortiz T, Rondon F, Barreto G, Lareu MV, Henao J, Carracedo A "Genetic variability of the SNPforID 52-plex identification-SNP panel in Central West Colombia.". Forensic Science International: Genetics (Article in Press)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian Mestizos (Antioquia)

Sample UID: SA002943S

Sample Description:This sample consists of unrelated, healthy Mestizos (a widely used description in Colombia denoting mixed descent American -European - African ancestry) who were born in the Antioquia, one of 32 Departments of Colombia.

Number of Chromosomes: 50

Relation to Other Samples:

References:
- Porras L, Phillips C, Fondevila M, Beltran L, Ortiz T, Rondon F, Barreto G, Lareu MV, Henao J, Carracedo A "Genetic variability of the SNPforID 52-plex identification-SNP panel in Central West Colombia.". Forensic Science International: Genetics (Article in Press)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian Mestizos (Valle)

Sample UID: SA002944T

Sample Description:This sample consists of unrelated, healthy Mestizos (a widely used description in Colombia denoting mixed descent American -European - African ancestry) who were born in the Valle, one of the 32 department of Columbia.

Number of Chromosomes: 56

Relation to Other Samples:

References:
- Porras L, Phillips C, Fondevila M, Beltran L, Ortiz T, Rondon F, Barreto G, Lareu MV, Henao J, Carracedo A "Genetic variability of the SNPforID 52-plex identification-SNP panel in Central West Colombia.". Forensic Science International: Genetics (Article in Press)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian Mestizos (Tolima)

Sample UID: SA002945U

Sample Description:This sample consists of unrelated, healthy Mestizos (a widely used description in Colombia denoting mixed descent American -European - African ancestry) who were born in Tolima, one of the 32 Departments of Colombia.

Number of Chromosomes: 52

Relation to Other Samples:

References:
- Porras L, Phillips C, Fondevila M, Beltran L, Ortiz T, Rondon F, Barreto G, Lareu MV, Henao J, Carracedo A "Genetic variability of the SNPforID 52-plex identification-SNP panel in Central West Colombia.". Forensic Science International: Genetics (Article in Press)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombians

Sample UID: SA003061K

Sample Description:This sample consists of 150 healthy, unrelated randomly chosen Colombian individuals (30-50 years of age) from Santa Fe de Bogota (Colombia).

Number of Chromosomes: 300

Relation to Other Samples:

References:
- Camacho Vanegas O, Giusti B, Restrepo Fernandez CM, Abbate R, Pepe G. "Frequency of factor V (FV) Leiden and C677T methylenetetrahydrofolate reductase (MTHFR) mutations in Colombians". Thromb Haemost. 79:883-4. (1998) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Bucaramanga

Sample UID: SA003604N

Sample Description:This sample consists of Colombians from Bucaramanga, Colombia.

Number of Chromosomes: 280

Relation to Other Samples:

References:
- Serrano NC, Díaz LA, Casas JP, Hingorani AD, de Lucca DM, Páez MC. "Frequency of eNOS polymorphisms in the Colombian general population". BMC Genet 11:(2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pasto

Sample UID: SA003605O

Sample Description:This sample consists of Colombians from Pasto, Colombia.

Number of Chromosomes: 272

Relation to Other Samples:

References:
- Serrano NC, Díaz LA, Casas JP, Hingorani AD, de Lucca DM, Páez MC. "Frequency of eNOS polymorphisms in the Colombian general population". BMC Genet 11:(2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Cartagena

Sample UID: SA003606P

Sample Description:This sample consists of Colombians from Cartagena, Colombia.

Number of Chromosomes: 270

Relation to Other Samples:

References:
- Serrano NC, Díaz LA, Casas JP, Hingorani AD, de Lucca DM, Páez MC. "Frequency of eNOS polymorphisms in the Colombian general population". BMC Genet 11:(2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Pereira

Sample UID: SA003607Q

Sample Description:This sample consists of Colombians from Pereira, Colombia.

Number of Chromosomes: 282

Relation to Other Samples:

References:
- Serrano NC, Díaz LA, Casas JP, Hingorani AD, de Lucca DM, Páez MC. "Frequency of eNOS polymorphisms in the Colombian general population". BMC Genet 11:(2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Quibdo

Sample UID: SA003608R

Sample Description:This sample consists of Colombians from Quibdo, Colombia.

Number of Chromosomes: 338

Relation to Other Samples:

References:
- Serrano NC, Díaz LA, Casas JP, Hingorani AD, de Lucca DM, Páez MC. "Frequency of eNOS polymorphisms in the Colombian general population". BMC Genet 11:(2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Neiva

Sample UID: SA003609S

Sample Description:This sample consists of Colombians from Neiva, Colombia.

Number of Chromosomes: 338

Relation to Other Samples:

References:
- Serrano NC, Díaz LA, Casas JP, Hingorani AD, de Lucca DM, Páez MC. "Frequency of eNOS polymorphisms in the Colombian general population". BMC Genet 11:(2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian

Sample UID: SA002416N

Sample Description:This sample consists of adult volunteers most of them students and workers from health institutions, Medellin, Colombia.

Number of Chromosomes: 300

Relation to Other Samples:

References:
- Díaz FJ, Vega JA, Patiño PJ, Bedoya G, Nagles J, Villegas C, Vesga R, Rugeles MT "Frequency of CCR5 delta-32 mutation in human immunodeficiency virus (HIV)-seropositive and HIV-exposed seronegative individuals and in general population of Medellin, Colombia". Mem Inst Oswaldo Cruz. 95:237-42. (2000) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Columbian

Sample UID: SA003753S

Sample Description:This sample consists of Colombians from Riohacha, Colombia. The donors were selected at random, irrespective of skin color. The study was approved by the Ethical Committee at the Faculty of Medicine, Tottori University.

Number of Chromosomes: 248

Relation to Other Samples:

References:
- Yuasa I, Harihara S, Jin F, Nishimukai H, Fujihara J, Fukumori Y, Takeshita H, Umetsu K, Saitou N. "Distribution of OCA2*481Thr and OCA2*615Arg, associated with hypopigmentation, in several additional populations". J Hum Genet. 13:215-7. (2011) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Bogota

Sample UID: SA004556U

Sample Description:This sample consists of individuals from Bogota, Colombia. This sample was typed as part of the collaborative exercise by the participating laboratory as part of the International Society for Forensic Genetics (GHEP-ISFG) working commission on autosomal indels for human identification. This study was approved by vote at the GHEP-ISFG general meeting and complies with the ethical principles of the 2000 Helsinki Declaration of the World Medical Association. The samples used in this collaborative exercise were anonymised DNA extracts previously obtained from healthy unrelated individuals who consented to participate in this study under strictly confidential conditions.

Number of Chromosomes: 648

Relation to Other Samples:

References:
- Pereira R, Alves C, Aler M, Amorim A, ArAvalo C, Betancor E, Braganholi D, Bravo ML, Brito P, Builes JJ, Burgos G, Carvalho EF, Castillo A, Catanesi CI, Cicarelli RMB, Coufalova P, Dario P, D'Amato ME, Davison S, Ferragut J, Fondevila M, Furfuro S, Garcia O, Gaviria A, Gomes I, Gonzalez E, Gonzalez-Linan A, Gross TE, Hernanndez A, Huang Q, Jimenez S, Jobim LF, Lopez-Parra AM, Marino M, Marques S, Marti­nez-Cortes G, Masciovecchio V, Parra D, Penacino G, Pinheiro MF, Porto M, Posada Y, Restrepo C, Ribeiro T, Rubio L, Sala A, Santurtun A, Soli­s LS, Souto L, Streitemberger E, Torres A, Vilela-Lamego C, Yunis JJ, Yurrebaso I, Gusmao L. "A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations". Forensic Sci Int Genet. 32:18-25. (2017) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Norte de Santander

Sample UID: SA004558W

Sample Description:This sample consists of individuals from Colombia - Norte de Santander. This sample was typed as part of the collaborative exercise by the participating laboratory as part of the International Society for Forensic Genetics (GHEP-ISFG) working commission on autosomal indels for human identification. This study was approved by vote at the GHEP-ISFG general meeting and complies with the ethical principles of the 2000 Helsinki Declaration of the World Medical Association. The samples used in this collaborative exercise were anonymised DNA extracts previously obtained from healthy unrelated individuals who consented to participate in this study under strictly confidential conditions.

Number of Chromosomes: 218

Relation to Other Samples:

References:
- Pereira R, Alves C, Aler M, Amorim A, ArAvalo C, Betancor E, Braganholi D, Bravo ML, Brito P, Builes JJ, Burgos G, Carvalho EF, Castillo A, Catanesi CI, Cicarelli RMB, Coufalova P, Dario P, D'Amato ME, Davison S, Ferragut J, Fondevila M, Furfuro S, Garcia O, Gaviria A, Gomes I, Gonzalez E, Gonzalez-Linan A, Gross TE, Hernanndez A, Huang Q, Jimenez S, Jobim LF, Lopez-Parra AM, Marino M, Marques S, Marti­nez-Cortes G, Masciovecchio V, Parra D, Penacino G, Pinheiro MF, Porto M, Posada Y, Restrepo C, Ribeiro T, Rubio L, Sala A, Santurtun A, Soli­s LS, Souto L, Streitemberger E, Torres A, Vilela-Lamego C, Yunis JJ, Yurrebaso I, Gusmao L. "A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations". Forensic Sci Int Genet. 32:18-25. (2017) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian

Sample UID: SA004033K

Sample Description:This sample consists of Colombians.

Number of Chromosomes: 296

Relation to Other Samples:

References:
- Mead S, Stumpf MP, Whitfield J, Beck JA, Poulter M, Campbell T, Uphill JB, Goldstein D, Alpers M, Fisher EM, Collinge J. "Balancing selection at the prion protein gene consistent with prehistoric kurulike epidemics". Science. 300:640-3. (2003) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Guajira, Colombia

Sample UID: SA004075Q

Sample Description:This sample consists of residents from the department of La Guajira, Colombia. The sample collection was carried out at hospitals in the munipalities of Riohacha, Maicao and Uribia and in some Wayúu villages (Rancherias). The inclusion criteria were to be 18 years old or over and local area residents for a year or more. The Guajira peninsula is located in the northern tip of South America (10°23' and 12°28' north latitude, 71°06' and 73°39' W). This sample contains the Amerindian population Wayúu and other residents of the geographic region. This sample was collected by Grupo de Genética de Poblaciones e Identificación-Universidad Nacional de Colombia

Number of Chromosomes: 582

Relation to Other Samples:

References:
- Rojas MY, Alonso LA, Sarmiento VA, Eljach LY, Usaquén W "Substructure Analysis of La Guajira-Colombia population: A Genetic, Demographic and Genealogical Overview". Manuscript submitted (2012)

- Sarmiento VA, Alonso LA, Eljach LY, Rojas MY, Sierra WU, Usaquén W "Data on allele frequency for 15 microsatellites of the human population in the Department of La Guajira (Colombia)". Manuscript Submitted (2012)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian

Sample UID: SA004123K

Sample Description:This sample consists of healthy individuals born in the Colombian Carribean region. The subjects gave their informed consent. The study was approved by the Ethics committee of Universidad Libre of Barranquilla, Colombia.

Number of Chromosomes: 256

Relation to Other Samples:

References:
- Mendoza Torres E, Varela Prieto LL, Villarreal Camacho JL, Villanueva Torregroza DA. "Diagnosis of adult-type hypolactasia/lactase persistence: genotyping of single nucleotide polymorphism (SNP C/T-13910) is not consistent with breath test in Colombian Caribbean population". Arq Gastroenterol. 5-8. (2012) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombian in Medellín, Colombia (CLM)

Sample UID: SA004109O

Sample Description:This sample consists of blood samples collected in the Medellín, Colombia, metropolitan area. All of the samples are from mother-father-adult child trios. All parents in the trios identified themselves as having all four grandparents born in Colombia.

This sample is part of the 1000 genomes collections.

Number of Chromosomes: 188

Relation to Other Samples:

References:
- 1000 genomes phase1 samples data Online citation.

- 1000genomes project samples page Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Colombians

Sample UID: SA004190O

Sample Description:This sample is part of 1000 genomes collection.

Number of Chromosomes: 210

Relation to Other Samples:

References:
- 1000 genomes phase1 samples data Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Antioquia

Sample UID: SA004555T

Sample Description:This sample consists of individuals from Antioquia, Colombia. This sample was typed as part of the collaborative exercise by the participating laboratory as part of the International Society for Forensic Genetics (GHEP-ISFG) working commission on autosomal indels for human identification. This study was approved by vote at the GHEP-ISFG general meeting and complies with the ethical principles of the 2000 Helsinki Declaration of the World Medical Association. The samples used in this collaborative exercise were anonymised DNA extracts previously obtained from healthy unrelated individuals who consented to participate in this study under strictly confidential conditions.

Number of Chromosomes: 228

Relation to Other Samples:

References:
- Pereira R, Alves C, Aler M, Amorim A, ArAvalo C, Betancor E, Braganholi D, Bravo ML, Brito P, Builes JJ, Burgos G, Carvalho EF, Castillo A, Catanesi CI, Cicarelli RMB, Coufalova P, Dario P, D'Amato ME, Davison S, Ferragut J, Fondevila M, Furfuro S, Garcia O, Gaviria A, Gomes I, Gonzalez E, Gonzalez-Linan A, Gross TE, Hernanndez A, Huang Q, Jimenez S, Jobim LF, Lopez-Parra AM, Marino M, Marques S, Marti­nez-Cortes G, Masciovecchio V, Parra D, Penacino G, Pinheiro MF, Porto M, Posada Y, Restrepo C, Ribeiro T, Rubio L, Sala A, Santurtun A, Soli­s LS, Souto L, Streitemberger E, Torres A, Vilela-Lamego C, Yunis JJ, Yurrebaso I, Gusmao L. "A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations". Forensic Sci Int Genet. 32:18-25. (2017) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: San Basilio de Palenque

Sample UID: SA004277U

Sample Description:This sample consists of unrelated healthy individuals living in San Basilio de Palenque, Colombia. San Basilio de Palenque is considered the first free town in America.

Number of Chromosomes: 228

Relation to Other Samples:

References:
- Martínez B, BuilesJ.J, Gaviria A, Burgos G, Manrique A, Aguirre DP, Mendoza L, Bravo MLJ, Pereira R, Gusmao L, Marrugo J. "Population genetic data of 38 autosomal InDels in San Basilio de Palenque, the first free town in America". Forensic Science International: Gentics Suppl sereis 4:e73-e74. (2013)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Narino

Sample UID: SA004274R

Sample Description:This sample consists of unrelated individuals from Narino, Southwest andean region.

Number of Chromosomes: 156

Relation to Other Samples:

References:
- Ibarra A1, Freire-Aradas A, Martínez M, Fondevila M, Burgos G, Camacho M, Ostos H, Suarez Z, Carracedo A, Santos S, Gusmão L. "Comparison of the genetic background of different Colombian populations using the SNPforID 52plex identification panel". Int J Legal Med 128:19-25. (2014) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Choco

Sample UID: SA004557V

Sample Description:This sample consists of colombian individuals from Choco, Colombia. This sample was typed as part of the collaborative exercise by the participating laboratory as part of the International Society for Forensic Genetics (GHEP-ISFG) working commission on autosomal indels for human identification. This study was approved by vote at the GHEP-ISFG general meeting and complies with the ethical principles of the 2000 Helsinki Declaration of the World Medical Association. The samples used in this collaborative exercise were anonymised DNA extracts previously obtained from healthy unrelated individuals who consented to participate in this study under strictly confidential conditions.

Number of Chromosomes: 436

Relation to Other Samples:

References:
- Pereira R, Alves C, Aler M, Amorim A, ArAvalo C, Betancor E, Braganholi D, Bravo ML, Brito P, Builes JJ, Burgos G, Carvalho EF, Castillo A, Catanesi CI, Cicarelli RMB, Coufalova P, Dario P, D'Amato ME, Davison S, Ferragut J, Fondevila M, Furfuro S, Garcia O, Gaviria A, Gomes I, Gonzalez E, Gonzalez-Linan A, Gross TE, Hernanndez A, Huang Q, Jimenez S, Jobim LF, Lopez-Parra AM, Marino M, Marques S, Marti­nez-Cortes G, Masciovecchio V, Parra D, Penacino G, Pinheiro MF, Porto M, Posada Y, Restrepo C, Ribeiro T, Rubio L, Sala A, Santurtun A, Soli­s LS, Souto L, Streitemberger E, Torres A, Vilela-Lamego C, Yunis JJ, Yurrebaso I, Gusmao L. "A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations". Forensic Sci Int Genet. 32:18-25. (2017) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan