ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
NagaPO000527OTibeto-Burman

Synonyms:
Geographic Location1:  27.5N, 93E; 23.75N, 96E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: The term Naga people refers to a conglomeration of many tribes inhabiting the North Eastern part of India and north-western Burma.
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Naga

Sample UID: SA001225K

Sample Description:This sample consists of healthy unrelated Naga individuals. The Naga are a highly endogamous population group inhabiting the hill ranges in Manipur and Nagaland, India.

Number of Chromosomes: 48

Relation to Other Samples:

References:
- Kashyap VK, Sarkar N, Trivedi R. "Allele frequencies for STR loci of the Powerplex 16 multiplex system in five endogamous populations of India". Forensic Sci Int. 126:178-186. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Ao Naga

Sample UID: SA003820N

Sample Description:This sample consists of Ao Naga individuals from Mokokchung district, Nagaland, India. Ao Nagas are one of the prominent tribes in Nagaland.

Number of Chromosomes: 56

Relation to Other Samples:

References:
- Gallego Romero I, Basu Mallick C, Liebert A, Crivellaro F, Chaubey G, Itan Y, Metspalu M, Eaaswarkhanth M, Pitchappan R, Villems R, Reich D, Singh L, Thangaraj K, Thomas MG, Swallow DM, Mirazón Lahr M, Kivisild T. "Herders of Indian and European Cattle Share Their Predominant Allele for Lactase Persistence". Mol Biol Evol 29:249-260. (2012) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Chakhesang Naga

Sample UID: SA003821O

Sample Description:This sample consists of individuals of Chakhesang Naga tribe from Phek district, Nagaland.

Number of Chromosomes: 28

Relation to Other Samples:

References:
- Gallego Romero I, Basu Mallick C, Liebert A, Crivellaro F, Chaubey G, Itan Y, Metspalu M, Eaaswarkhanth M, Pitchappan R, Villems R, Reich D, Singh L, Thangaraj K, Thomas MG, Swallow DM, Mirazón Lahr M, Kivisild T. "Herders of Indian and European Cattle Share Their Predominant Allele for Lactase Persistence". Mol Biol Evol 29:249-260. (2012) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Naga Sema

Sample UID: SA003822P

Sample Description:This sample consists of individuals of Naga Sema tribe from Kohima district, Nagaland.

Number of Chromosomes: 44

Relation to Other Samples:

References:
- Gallego Romero I, Basu Mallick C, Liebert A, Crivellaro F, Chaubey G, Itan Y, Metspalu M, Eaaswarkhanth M, Pitchappan R, Villems R, Reich D, Singh L, Thangaraj K, Thomas MG, Swallow DM, Mirazón Lahr M, Kivisild T. "Herders of Indian and European Cattle Share Their Predominant Allele for Lactase Persistence". Mol Biol Evol 29:249-260. (2012) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Naga

Sample UID: SA003493T

Sample Description:This sample consists of Naga from Nagaland, India.

Number of Chromosomes: 34

Relation to Other Samples:

References:
- Chaubey G, Metspalu M, Choi Y, Mägi R, Romero IG, Soares P, van Oven M, Behar DM, Rootsi S, Hudjashov G, Mallick CB, Karmin M, Nelis M, Parik J, Reddy AG, Metspalu E, van Driem G, Xue Y, Tyler-Smith C, Thangaraj K, Singh L, Remm M, Richards MB, Lahr MM, Kayser M, Villems R, Kivisild T. "Population Genetic Structure in Indian Austroasiatic speakers: The Role of Landscape Barriers and Sex-specific Admixture". Mol Biol Evol. (Epub ,ahead of print) (2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Ago Naga

Sample UID: SA004488Y

Sample Description:This sample consists of Ago Naga individuals from Nagaland. This tribe belongs to the Tibeto-Burman linguistic family. This sample consists of Paniya individuals from Kerala. This tribe belongs to the Dravidian linguistic family. This sample is part of the DNA bank of CSIR-Centre for Cellular and Molecular Biology (Hyderabad). The Institutional Ethical Committee of Centre for Cellular and Molecular Biology (Hyderabad) approved the study, and prior permission was also obtained from local authorities.Informed written consent was obtained from each subject.

Number of Chromosomes: 72

Relation to Other Samples:

References:
- Mishra A, Nizammuddin S, Mallick CB, Singh S, Prakash S, Siddiqui NA, Rai N, Carlus SJ, Sudhakar DV, Tripathi VP, Möls M, Kim-Howard X, Dewangan H, Mishra A, Reddy AG, Roy B, Pandey K, Chaubey G, Das P, Nath SK, Singh L, Thangaraj K "Genotype-Phenotype Study of the Middle Gangetic Plain in India Shows Association of rs2470102 with Skin Pigmentation.". J Invest Dermatol. 137:670-677. (2017) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan