ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
IndonesianPO000562N

Synonyms:
Geographic Location1:  6N, 95E; 11S, 141E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Sumatra

Sample UID: SA002549U

Sample Description:This sample consists of unrelated individuals from the island of Sumatra, Indonesia.

Number of Chromosomes: 144

Relation to Other Samples:

References:
- Martinson JJ, Chapman NH, Rees DC, Liu YT, Clegg JB. "Global distribution of the CCR5 gene 32-basepair deletion". Nat Genet 16:100-103. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesian

Sample UID: SA001421I

Sample Description:This sample consists of Indonesians. Appropriate consent was obtained.

Number of Chromosomes: 270

Relation to Other Samples:

References:
- Chang JG, Ko YC, Lee JC, Chang SJ, Liu TC, Shih MC, Peng CT. "Molecular analysis of mutations and polymorphisms of the Lewis secretor type alpha(1,2)-fucosyltransferase gene reveals that Taiwan aborigines are of Austronesian derivation". J Hum Genet. 47:60-65. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesian

Sample UID: SA001800J

Sample Description:This sample consists of unrelated Indonesian individuals living in Surabaya (east region of Java Island).

Number of Chromosomes: 210

Relation to Other Samples:

References:
- Dobashi Y, Kido A, Fujitani N, Hara M, Susukida R, Oya M. "STR data for the AmpFLSTR Identifiler loci in Bangladeshi and Indonesian populations". Leg Med (Tokyo). 7:222-226. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Palembang, Indonesia

Sample UID: SA003169T

Sample Description:This sample consists of Indonesians.

Number of Chromosomes: 122

Relation to Other Samples:

References:
- Schneider JA, Rees DC, Liu YT, Clegg JB. "Worldwide distribution of a common methylenetetrahydrofolate reductase mutation". Am J Hum Genet. 62:1258-60. (1998) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesia (IDN)

Sample UID: SA003480P

Sample Description:This sample consists of unrelated individuals of the Indonesian who are inhabitants in the west part of Java Island in Indonesia. The indonesian individuals were gathered from several villages and ethnically classified into Sunda or Java.

Number of Chromosomes: 242

Relation to Other Samples:

References:
- Fujimoto A, Kimura R, Ohashi J, Omi K, Yuliwulandari R, Batubara L, Mustofa MS, Samakkarn U, Settheetham-Ishida W, Ishida T, Morishita Y, Furusawa T, Nakazawa M, Ohtsuka R, Tokunaga K. "A scan for genetic determinants of human hair morphology: EDAR is associated with Asian hair thickness". Hum Mol Genet. 17:835-43. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesian

Sample UID: SA002872T

Sample Description:This sample consists of unrelated Indonesian individuals, mainly living in Surabaya, Indonesia. The donors were selected at random, irrespective of skin color, and their phenotypic data were unavailable.

Number of Chromosomes: 210

Relation to Other Samples:

References:
- Yuasa I, Umetsu K, Harihara S, Kido A, Miyoshi A, Saitou N, Dashnyam B, Jin F, Lucotte G, Chattopadhyay PK, Henke L, Henke J. "Distribution of two Asian-related coding SNPs in the MC1R and OCA2 genes". Biochem Genet. 45:535-42. (2007) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesian

Sample UID: SA002935T

Sample Description:This sample consists of male Indonesian individuals.

Number of Chromosomes: 156

Relation to Other Samples:

References:
- Shi H, Tan SJ, Zhong H, Hu W, Levine A, Xiao CJ, Peng Y, Qi XB, Shou WH, Ma RL, Li Y, Su B, Lu X "Winter temperature and UV are tightly linked to genetic changes in the p53 tumor suppressor pathway in Eastern Asia". Am J Hum Genet. 84:534-41.. (2009) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesian

Sample UID: SA003124K

Sample Description:This sample consists of Indonesian women who were recruited at the time of admission for labor and delivery at the Dr.Cipto Mangunkusumo Hoapital, Jakarta, Indonesia. Informed consent were obtained from all the participants.

Number of Chromosomes: 54

Relation to Other Samples:

References:
- Prasmusinto D, Skrablin S, Hofstaetter C, Fimmers R, van der Ven K. "The methylenetetrahydrofolate reductase 677 C-->T polymorphism and preeclampsia in two populations". Obstet Gynecol. 99:1085-92. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesian

Sample UID: SA003056O

Sample Description:This sample consists of unrelated, healthy Indonesian individuals from Java. All the subjects gave informed consent for the study.

Number of Chromosomes: 98

Relation to Other Samples:

References:
- Pepe G, Camacho Vanegas O, Giusti B, Brunelli T, Marcucci R, Attanasio M, Rickards O, De Stefano GF, Prisco D, Gensini GF, Abbate R. "Heterogeneity in world distribution of the thermolabile C677T mutation in 5,10-methylenetetrahydrofolate reductase". Am J Hum Genet. 63:917-20. (1998) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Indonesians

Sample UID: SA004614P

Sample Description:This sample consists of Indonesian individuals from Taiwan. Taiwan is an island with heterogeneous population located at the junction of the Western Pacific and the South China Sea. The majority of Taiwan population is Han. Other populations in Taiwan include immigrants / foreigners living or working in Taiwan, and several indigenous populations.

Number of Chromosomes: 138

Relation to Other Samples:

References:
- Hwa HL, Lin CP, Huang TY, Kuo PH, Hsieh WH, Lin CY, Yin H, Tseng LH, Lee JC. "A panel of 130 autosomal single-nucleotide polymorphisms for ancestry assignment in five Asian populations and in Caucasians". Forensic Sci Med Pathol. 13:177-187.. (3017) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan