ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
XibePO000580N

Synonyms: Xibo ;
Geographic Location1:  52N, 76E; 38N, 132E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibo, HGDP-CEPH

Sample UID: SA001491P

Sample Description:This sample from China is part of the Human Genome Diversity Cell Line Panel collected by the Human Genome Diversity Project (HGDP) and the Foundation Jean Dausset (CEPH). This sample consists of unrelated individuals and was collected with proper informed consent.

Number of Chromosomes: 18

Relation to Other Samples:

References:
- Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. "Genetic structure of human populations". Science 298:2381-2385. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibo

Sample UID: SA002017K

Sample Description:This sample consists of healthy unrelated Xibo individuals from northwest China. Each individual was the offspring of a non-consanguineous marriage of members of the same nationality within three generations.

Number of Chromosomes: 68

Relation to Other Samples:

References:
- Ma L, Xue Y, Liu Y, Wang Z, Cui X, Li P, Fu S. "Polymorphism study of seven SNPs at ADH genes in 15 Chinese populations". Hereditas. 142:103-111. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibo

Sample UID: SA002758W

Sample Description:This sample consists of Xibo individuals from Kaiyuan city, Liaoning Province, China.

Number of Chromosomes: 24

Relation to Other Samples:

References:
- Li H & Kidd KK "Low allele frequency of ADH1B*47His in West China and different ADH1B haplotypes in Western Asia from Eastern Asia". Am. J. Med. Genet. 84:92-94. (2009)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibo

Sample UID: SA002636R

Sample Description:This sample consists of healthy, unrelated Xibo individuals from Yili of Xinjiang province, China. Each individual was the offspring of a non-consanguineous marriage of members of the same nationality within three generations. Informed consent from the participants and the approval of appropriate local authority were obtained.

Number of Chromosomes: 178

Relation to Other Samples:

References:
- Mao R, Fan Y, Chen F, Fu S. "Genetic polymorphism of MTHFR G1793A in Chinese populations". Eur J Epidemiol. (Epub ahead of print) (2008)

- Mao R, Fan Y, Chen F, Sun D, Bai J, Fu S. "Methylenetetrahydrofolate reductase gene polymorphisms in 13 Chinese ethnic populations.". Cell Biochem Funct. 26:352-8. (2008) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibe

Sample UID: SA002884W

Sample Description:This sample consists of male Xibe individuals from China. The protocol of this study was approved by the institutional review board of Kunming Institute of Zoology, Chinese Academy of Sciences.

Number of Chromosomes: 62

Relation to Other Samples:

References:
- Shi H, Tan SJ, Zhong H, Hu W, Levine A, Xiao CJ, Peng Y, Qi XB, Shou WH, Ma RL, Li Y, Su B, Lu X "Winter temperature and UV are tightly linked to genetic changes in the p53 tumor suppressor pathway in Eastern Asia". Am J Hum Genet. 84:534-41.. (2009) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibe in Xinjiang, China(CXX)

Sample UID: SA004408Q

Sample Description:This sample consists of Xibo individuals from Xinjiang Province, China.

Number of Chromosomes: 196

Relation to Other Samples: Superset of sample SA004323M

References:
- Wei YL, Wei L, Zhao L, Sun QF, Jiang L, Zhang T, Liu HB, Chen JG, Ye J, Hu L, Li CX "A single-tube 27-plex SNP assay for estimating individual ancestry and admixture from three continents". Int J Legal Med. 130:27-37. (2016) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibe

Sample UID: SA004338S

Sample Description:This sample consists of unrelated healthy Xibe individuals living in Ili, Xinjiang Uygur autonomous region, China. Before sample collection, all the participants signed the informed consent after given an explanation about this study. Volunteers in this study should have ancestors living in the region for more than three generations and have no common ancestry tracing back more than three generations. The study was conducted in accordance with the human and ethical research principles of Xi'an Jiaotong University Health Science Center, China and approved by the ethics committee of Xi'an Jiaotong University Health Science Center.

Number of Chromosomes: 466

Relation to Other Samples:

References:
- Meng HT, Zhang YD, Shen CM, Yuan GL, Yang CH, Jin R, Yan JW, Wang HD, Liu WJ, Jing H, Zhu BF. "Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other group". Sci Rep. (2015) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibo

Sample UID: SA004323M

Sample Description:This sample consists of Xibo individuals from Xinjiang Province, China.

Number of Chromosomes: 58

Relation to Other Samples:

References:
- Pakstis AJ , Haigh E, Cherni L, Ben Ammar ElGaaied A, Barton A, Evsanaa B, Togtokh A, Brissenden J, Roscoe J, Bulbul O, Filoglu G, Gurkan C, Meiklejohn KA, Robertson JM, Li,C.-X. Wei Y.-L., Li H,Soundararajan U,Rajeevan H, Kidd JR, Kidd KK "52 additional reference population samples for the 55 AISNP panel". Forensic Science International: Genetics 269-271. (2015) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Xibe in Xinjiang, China (CXX)

Sample UID: SA004661R

Sample Description:This sample consists of Xibe individuals from Xinjiang Province,China. Written informed consent was obtained from all individuals. This sample is part of Caixia Li's group in Institute of Forensic Science, Beijing, China.

Number of Chromosomes: 190

Relation to Other Samples: Subset of SA004408Q

References:
- Jiang L, Wei YL, Zhao L, Li N, Liu T, Liu HB, Ren LJ, Li JL, Hao HF, Li Q, Li CX. "Global analysis of population stratification using a smart panel of 27 continental ancestry-informative SNPs". Forensic Sci Int Genet. 35:e10-e12. (2018) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan