ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
TimoresePO000636P

Synonyms:
Geographic Location1:  8S, 124E; 9.5S, 127.5E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Being curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: East Timor

Sample UID: SA001670O

Sample Description:This sample consists of unrelated individuals from East Timor.

Number of Chromosomes: 372

Relation to Other Samples:

References:
- Souto L, Alves C, Gusmao L, Ferreira E, Amorim A, Corte-Real F, Vieira DN. "Population data on 15 autosomal STRs in a sample from East Timor". Forensic Sci Int. 155:77-80. (2005) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Timorese

Sample UID: SA002605N

Sample Description:This sample consists of unrelated Timorese from Insular Southeast Asia.

Number of Chromosomes: 210

Relation to Other Samples:

References:
- Kimura R, Soemantri A, Settheetham-Ishida W, Ohtsuka R, Inaoka T, Pookajorn S, Tiwawech D, Duanchang P, Ishida T "Anthropological implication of the SDF1-3'A allele distribution in Southeast Asia and Melanesia.". J Hum Genet. 47:117-121. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: East Timor

Sample UID: SA003441M

Sample Description:This sample consists of unrelated individuals from the East Timor Population, including the regions of the Oecussi-Ambeno enclave and Atauro Island. Samples from volunteers were collected with informed consent.

Number of Chromosomes: 92

Relation to Other Samples:

References:
- Santos C, Phillips C, Fondevila M, Porras-Hurtado L, Carracedo A, Souto L, Lareu MV. "A study of East Timor variability using the SNPforID 52-plex SNP panel". Forensic Sci Int Genet. (Epub ahead of print) (2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: East Timor

Sample UID: SA004513N

Sample Description:This sample consists of individuals from East Timor. This sample was obtained by University of Aveiro working in collaboration with National University of East Timor, Dili, East Timor. Written informed consent was obtained from donors regarding the use of samples for the characterisation of population variation.

Number of Chromosomes: 234

Relation to Other Samples:

References:
- Santos C, Phillips C, Fondevila M, Daniel R, van Oorschot RAH, Burchard EG, Schanfield MS, Souto L, Uacyisrael J, Via M, Carracedo Á, Lareu MV "Pacifiplex: an ancestry-informative SNP panel centred on Australia and the Pacific region". Forensic Sci Int Genet. 20:71-80. (2016) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: East Timor

Sample UID: SA004551P

Sample Description:This sample consists of individuals from East Timor. This sample was typed as part of the collaborative exercise by the participating laboratory as part of the International Society for Forensic Genetics (GHEP-ISFG) working commission on autosomal indels for human identification. This study was approved by vote at the GHEP-ISFG general meeting and complies with the ethical principles of the 2000 Helsinki Declaration of the World Medical Association. The samples used in this collaborative exercise were anonymised DNA extracts previously obtained from healthy unrelated individuals who consented to participate in this study under strictly confidential conditions.

Number of Chromosomes: 202

Relation to Other Samples:

References:
- Pereira R, Alves C, Aler M, Amorim A, ArAvalo C, Betancor E, Braganholi D, Bravo ML, Brito P, Builes JJ, Burgos G, Carvalho EF, Castillo A, Catanesi CI, Cicarelli RMB, Coufalova P, Dario P, D'Amato ME, Davison S, Ferragut J, Fondevila M, Furfuro S, Garcia O, Gaviria A, Gomes I, Gonzalez E, Gonzalez-Linan A, Gross TE, Hernanndez A, Huang Q, Jimenez S, Jobim LF, Lopez-Parra AM, Marino M, Marques S, Marti­nez-Cortes G, Masciovecchio V, Parra D, Penacino G, Pinheiro MF, Porto M, Posada Y, Restrepo C, Ribeiro T, Rubio L, Sala A, Santurtun A, Soli­s LS, Souto L, Streitemberger E, Torres A, Vilela-Lamego C, Yunis JJ, Yurrebaso I, Gusmao L. "A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations". Forensic Sci Int Genet. 32:18-25. (2017) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: East Timor

Sample UID: SA004421L

Sample Description:This sample consists of individuals from East Timor. This sample was obtained with informed written consent for scientific research. Institutional ethical approval documents were obtained and subjected to review by the European Commission.

Number of Chromosomes: 100

Relation to Other Samples:

References:
- Eduardoff M, Gross TE, Santos C, de la Puente M, Ballard D, Strobl C, Brsting C, Morling N, Fusco L, Hussing C, Egyed B, Souto L, Uacyisrael J, Syndercombe Court D, Carracedo , Lareu MV, Schneider PM, Parson W, Phillips C; EUROFORGEN-NoE Consortium, Parson W, Phillips C "Inter-laboratory evaluation of the EUROFORGEN Global ancestry-informative SNP panel by massively parallel sequencing using the Ion PGM". Forensic Sci Int Genet 23:178-89. (2016) Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan