ALFRED: allele frequency database
      The ALlele FREquency Database   
ALFRED is a resource of gene frequency data on human populations
supported by the Yale Center for Medical Informatics.
00ALFRED detailed record information

Population Information

NameALFRED UIDPrimary LanguageLanguage Family
PunjabiPO000675S

Synonyms:
Geographic Location1:  33.5N, 73E; 29N, 77E  

Sites typed for this population: View List
Population Samples: See Sample Information
External Resources: 
References: See references
Population Description: Bing curated
References:


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Punjabi

Sample UID: SA001912N

Sample Description:This sample consists of unrelated Punjabis who speak an Indo-European language.

Number of Chromosomes: 196

Relation to Other Samples:

References:
- Khaliq S, Hameed A, Ayub Q, Mazhar K, Mohyuddin A, Mansoor A, Mehdi SQ "Frequency of CCR5 Gene 32-bp deletion in Pakistani ethnic groups". Genet Test. 6:123-7. (2002) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Punjabi Hindus

Sample UID: SA001949X

Sample Description:This sample consists of healthy unrelated Hindus from Punjabi, India.

Number of Chromosomes: 228

Relation to Other Samples:

References:
- Singh PP, Singh M ,Mastana SS "APOE distribution in world populations with new data from India and the UK". Annals of Human Biology 33:279-308. (2006)


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Punjab

Sample UID: SA002526P

Sample Description:This sample consists of unrelated individuals from Punjab. This sample was collected as part of anthropological surveys of investigation of non-HIV related medical conditions.

Number of Chromosomes: 68

Relation to Other Samples:

References:
- Martinson JJ, Chapman NH, Rees DC, Liu YT, Clegg JB. "Global distribution of the CCR5 gene 32-basepair deletion". Nat Genet 16:100-103. (1997) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Punjab

Sample UID: SA003079T

Sample Description:This sample consists of healthy adults from Punjab, a tribal group from northern Pakistan. Informed consent were obtained from all the individuals.

Number of Chromosomes: 174

Relation to Other Samples:

References:
- Mansoor A, Mazhar K, Ali L, Muazzam AG, Siddiqi S, Usman S. "Prevalence of the C677T single-nucleotide polymorphism in the methylenetetrahydrofolate reductase gene among Pakistani ethnic groups". Genet Test Mol Biomarkers. 13:521-6. (2009) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Punjab

Sample UID: SA003341L

Sample Description:This sample consists of Punjabi individuals.

Note: This sample information is not fully curated. For additional information about the sample, consult the publications under "References". The sample was entered as part of data submission by Eisenberg DA.

Number of Chromosomes: 330

Relation to Other Samples:

References:
- Balgir PP, Kaur M. "Restriction isotyping of apolipoprotein E among populations of Punjab, northwestern India". Hum Biol. 75:771-6.. (2003) Online citation.

- Eisenberg DA, Kuzawa, CW, Hayes MG "Worldwide allele frequencies of the human apolipoprotein E (APOE) gene: climate, local adaptations and evolutionary history". American Journal of Physical Anthropology 143:100-11. (2010) Online citation.


Sample Information:

Graph estimated heterozygosities for various sites

Sample Name: Punjabi in Lahore, Pakistan (PJL)

Sample UID: SA004240K

Sample Description:This sample consists of Punjabi individuals who identified themselves and their parents as Punjabi.

This sample is part of the 1000 genomes samples collections.

Number of Chromosomes: 192

Relation to Other Samples:

References:
- 1000 genomes phase1 samples data Online citation.

- 1000genomes project samples page Online citation.


1Geographic Coordinates represent two opposite corners of a rectangle encompassing the area where the population lives.This data is preliminary and changing.

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© 2019 Kenneth K Kidd, Yale University. All rights reserved. The full Copyright Notification is also available.
Originally prototyped by Michael Osier with the aid of Kei Cheung
Upgrades and maintenance since 2002 by Haseena Rajeevan